Paenibacillus sp. JNUCC32: JNUCC32_01280
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Entry
JNUCC32_01280 CDS
T11069
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03030
DNA replication
pajn03430
Mismatch repair
pajn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNUCC32_01280
03430 Mismatch repair
JNUCC32_01280
03440 Homologous recombination
JNUCC32_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pajn03032
]
JNUCC32_01280
03400 DNA repair and recombination proteins [BR:
pajn03400
]
JNUCC32_01280
Enzymes [BR:
pajn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JNUCC32_01280
DNA replication proteins [BR:
pajn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JNUCC32_01280
DNA repair and recombination proteins [BR:
pajn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JNUCC32_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF8098
DUF6282
Motif
Other DBs
NCBI-ProteinID:
QOT10695
LinkDB
All DBs
Position
268888..272613
Genome browser
AA seq
1241 aa
AA seq
DB search
MSSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGI
KPIIGCEAYITAGSRKERGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHLEGYHYRPRI
DMEALAAHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDHGIP
EQKRVNPQLIQLSRETGIPLVATNDVHYLTESDAEVQDVLICIGTGKTVEDEDRLQIQTN
QLYLKSGSDMERLYPHVPEAILNTAKIADQCHLELEFGKSILPEYSSLPEGKNAAEYLRD
LCLSGLRERYEETERWQDEVQRSELEQRLDYELGVIESMGFSDYFLIVWDFIAYAHRKGI
AVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDERRDEVID
YVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGISIERAME
QSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPLQEGSEKTA
LTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGSKLDFEQVPDDDQTTYEMLG
RGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQAKHGRIEPEY
PHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREVLDRERSHFV
SGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYPVPFMASMLT
AVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRSAAEGSDKQADSPAGGGIR
FGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQAGAFDSLQG
HRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWDIEYPDIPPYTASQQLEFERE
LLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTITTKQGKAMAF
MECEDQIERCEVVLFPEVWKRSAHLIEKGALLAIRAKVQLQDEGFKLLAEEIAPLEAQTL
GQLVRRGKVRGTQGGRGRAEGAGRSAASGATGKQAASAGEPKAVLNAAQPLAATKGQDLP
PLGKEVSGMNRTSGKESRAGASNPKAEQRVFVKITADAERSEMLVKLKELLQRHPGPVAT
VLFYERSQKVLALSDAYRIEPSQELIAEMESMLGKDTVKVK
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagctctttcgtgcatttgcacgtgcatagtgaatacagtttgctcgatggagcggca
cgtatcggtgacctggtgcgggaagcggcggcgcttggcatgaaatcgctggcgctgacg
gatcatggcgtgatgtatggtgccgttccgttctataaagcctgcctggcgcagggcatc
aaaccgattatcggctgcgaggcctatatcacggcaggctcccgcaaggagcggggaagc
cgcaaggaccagccgatctatcatttgattttgcttgccaagaatgagaccggctatcgc
aatttaatgaagctgtgctcgatcgggcatttggaggggtatcattacagaccccgaatc
gacatggaggcgctggccgcccatcatgaaggcatcatatgcctcagcgcctgcttggga
ggcgaggttccccagcatctgcttcatggacgcgaagcggaagcgaaagctgccgcgctt
cgttatcaggcgatttttggagaagactactatctggagctgcaggatcacggaattccg
gagcagaagcgcgtgaatccccagctgattcagctaagccgcgagaccggcattccgctg
gtagcgaccaacgatgtgcattatctgaccgagagcgatgccgaggttcaggacgtcctg
atctgcatcggcacgggaaagacggtcgaagatgaagacaggctgcagattcagacgaat
cagctttatttgaagagcggcagcgacatggagcgtctgtatccccatgtgcctgaagct
atattgaatacggctaagattgcggaccagtgccatttggagctggagttcggcaaatcc
atcttgccggaatacagctcgcttccggaagggaagaatgctgcggaatatctgcgggat
ctctgcctgagcggattgcgggaacgctacgaagaaacggaacggtggcaggatgaagtg
caacgcagcgagctggagcagcgccttgattatgagctcggcgttatcgagagcatgggc
ttcagcgattatttcctgatcgtatgggatttcatcgcctatgcccaccggaaaggcatc
gcggtcggacccggaaggggttcctcggcaggaagcctagtggcttataccctgcagatt
accaatgtggatccgatgaaatacaagctgttgtttgagcgcttcctgaatccggaacgg
atcacgatgccggatatcgatatcgatttcagcgatgagcgccgggacgaggtcatcgat
tacgtggtggacaaatacgggaaagagcatgtggcccagatcattacgttcggtacgatg
gccgcaagggcagccgtccgcgacgtcgggcgtgcgctgaatgtgccgttcggggatgtg
gacaaggcggccaagctgatccctaaccacctgggcatcagcattgaaagagcgatggag
caaagcccgcagctgaaggagcagtacgaaacaaagccgaaggtacgcgagctgatcgac
atggcgatgaaggtcgagggcatgccgcgccatgcatcgacgcatgcggccggcatcgtc
atttccagggagcccttgacggatgcggtgccgctgcaggaaggcagcgagaagacggcg
ctgacgcagtattccatggagaatttggagagcgtggggctcctcaagatggattttttg
ggcctgcggacgctgtcgatcattgagcgtacgctgaaatggattcaagaattgaccggc
agtaagcttgatttcgaacaagtgccggatgacgaccaaacgacttacgaaatgctgggc
cgaggggagaccgcgggcgtatttcagctcgaatccgccgggatacggcgggtgctaaag
gatctgaaaccttcggtgtttgaggatatcgtatcggtgaatgccctgtaccgcccgggt
cccatggaatttattccgaagttcattcaggccaagcacggccggatcgagccggaatac
ccccatccggacctgatcccgattctgggcgatacgtacggcattatcgtttaccaggag
cagattatgcagatcgcttcgacaatggcgggtttctcgctcggggaagcggatctgctg
cgcagagcggtatcgaagaagaaacgcgaggtgctggaccgcgagcgcagccacttcgtt
tcagggagcctgaagctgggctataccgaggatgaggccaaccgcgtgtacgacatgatc
gtccggtttgccaactacggattcccgcgcgcgcatgctgccgcttacggcgtgctggcc
ttccagacggcttatcttaaggcgcactatccggttccgttcatggcttccatgctgaca
gccgtcatgggcagccatcggaaggtagccgaatacgtgctggaggcgcggcgcatcgat
atcgaggtcatgccgccggacgtcaacgaaagcgggacgtattttacgccggtcatgagc
cgttctgctgccgagggcagcgataaacaggccgattctccggccggcggcgggatccga
ttcgggcttgccgccatcaagaacgtcggcacgcaagcggtggagaatatcgtcgagatc
cggcgcgaaaagccgtttgaaagcctgcttgatttctgccgccgcgtcgacctccgcgta
tgcaacaagcgcgtgatcgagtccctgatccaggcgggcgccttcgattccttgcagggg
caccgctcccagctggtcgccatgctggacgaaacggtggaagcggccgtgaagtggaga
aaggagcgggatgatcttcagattcagctcttcgacttcgtggaaaccgcgaattgggac
attgaatatccggacatcccgccttataccgcaagtcagcagctcgaattcgaacgcgag
ctgctgggcatgtatttgtccggtcatccgctggacggctttgaagagacgctgacggag
tccggagcggatcggctcatggatctgcatgaagcggaggatgagtcgatggctacggtt
gccggcatggtggtctcgctgaagaccattacgacgaaacagggaaaagcgatggccttc
atggagtgcgaggatcaaatcgagcgctgcgaggtcgttctctttccggaagtgtggaag
cgcagcgcgcatctgattgaaaaaggcgccctgctcgcgatccgggcgaaggtccagctg
caggacgaaggcttcaagctgctggccgaagaaatcgctccgcttgaagcgcagaccctg
ggccagctcgttcggcggggcaaggtccggggaacgcagggcggcagaggcagggccgag
ggagcaggccggagcgccgcgtcgggcgcaaccggcaagcaggcggcttcggccggcgaa
ccaaaggccgttctgaatgcagcgcagccgcttgccgccacgaaaggccaagacctgcct
ccgctcggaaaggaagtttcgggcatgaaccgaacgtccgggaaggaatctcgagcaggc
gcatcgaatcctaaagcagagcagcgcgtgtttgtgaaaataacggccgatgcggagcga
tcggagatgctggtcaagctgaaagagcttctgcagcggcatccggggcctgtcgcaacg
gtgttgttttatgaacgaagccagaaggtgcttgcgctcagcgatgcctatcggatcgag
ccttcgcaagagctcattgccgaaatggagagcatgctgggcaaagacaccgttaaagtg
aagtga
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integrated database retrieval system
