Paenibacillus sp. JNUCC32: JNUCC32_02100
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Entry
JNUCC32_02100 CDS
T11069
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
pajn Paenibacillus sp. JNUCC32
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pajn03019
]
JNUCC32_02100
Messenger RNA biogenesis [BR:
pajn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JNUCC32_02100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
QOT10849
LinkDB
All DBs
Position
463959..464915
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AA seq
318 aa
AA seq
DB search
MKPINKLSIQDDFVGFYLLKELNMRQTNGTPPKDYFDIVLADASGQISAKYWDVTIQDKE
TFLPMQLVKIQGTVLSYRDQPQVKISRIRKATDADGVSLTDFVRAAPIRPVDLLHTIKLT
MNEITEPQVRSIVQYCVSKVEEKLMHYPAAKTYHHAYYAGLAYHIVRMLEIGDFICKQRP
FLNPDLIRAGIILHDIAKPEEMIAQMGIVTDYSNQGKLIGHIALASNWIVEAAIENGIAL
ESEVVLGLQHLVLSHHNLGEWGSPVQPQTAEAVALHHIDLLDAKMQMVEDALDTTIETEP
WTPMIRGLDNKAIYRLKV
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctattaataaactcagcatacaagatgattttgtcggtttttatttgttaaaa
gaattgaatatgagacagaccaacggcacgccgccgaaagactatttcgatattgttctc
gcggatgccagcggtcaaatatcggccaagtactgggatgtgaccatacaggataaagaa
acgttcctgccgatgcaattggtcaaaatccaggggaccgtactgagctacagggaccag
cctcaagtcaagatcagccgtatccgcaaggccaccgatgcggatggcgtctcgttaacg
gattttgtgagggctgcgcccattcgccccgtggatctgttacatacgatcaaacttacg
atgaacgagattacggagccgcaggtgcgaagcatcgtacagtattgcgtgtcgaaggtg
gaagagaagctgatgcattatccggctgccaaaacctatcatcatgcctattacgccggg
ctggcttaccatatcgtccgcatgctggagattggcgatttcatctgcaagcagcggccg
tttctgaatccggatttgatcagggcgggcattatcctgcatgatatcgcgaagccggaa
gagatgatcgcgcagatgggcatcgtaacggattacagcaaccagggcaagctgataggg
catatcgccctggcgtccaactggatcgtggaggcggcgatcgagaacggcatcgcgctt
gaatccgaagtggttctgggcttgcagcatctggtgctttcccatcataacctcggagag
tggggcagcccggttcagccgcaaacggccgaggccgtcgcgctgcatcatatcgatctg
ctggatgccaagatgcagatggtagaggacgccctggatacgacgattgaaacggagccg
tggacaccaatgatccgcggcctggataataaagcgatttatcggttgaaggtatga
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