Paenibacillus sp. JNUCC32: JNUCC32_02860
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Entry
JNUCC32_02860 CDS
T11069
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC32_02860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pajn03019
]
JNUCC32_02860
03009 Ribosome biogenesis [BR:
pajn03009
]
JNUCC32_02860
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNUCC32_02860
Messenger RNA biogenesis [BR:
pajn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNUCC32_02860
Ribosome biogenesis [BR:
pajn03009
]
Prokaryotic type
rRNA helicases
JNUCC32_02860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QOT10993
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All DBs
Position
635324..636925
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AA seq
533 aa
AA seq
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MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPL
IHKIAKEEERIVALVMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKRK
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDIQSILKLVPEERQTLL
FSATMPPNIQKLASQFLNEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTR
HRIPRKPLPTIAEAIEGKQRIIAERVLEIIEQGELTEYKGLAIQLLEQYDSVQLLAAAMK
ILTGDKKEASDIHLTPEDPIRAKRRKPDIRNGRKPSGGYGGRGNSGGYRRDGGSGGGGNR
GGYSKGGYSRDGGGGYNRDRDGGGYNRDRNNSGDRKPRSYSGGERRPNRSGDE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaattttgcagattttggcttggagccgcgcgtgctgcaagcaatcactgagctt
ggcttcgaggaagccacaccgattcaatcccaatcgattccgattgcactcaccggaaaa
gacatgattggacaagcacagactggtacaggtaagacagcagcattcggcctacctctt
atccacaaaatcgccaaagaagaagagcgtatcgtcgctctcgtaatgaccccaacccgc
gaacttgccattcaggttgcagaagaaatcggcaagctgtcccgtttcaaaggaatccgt
tccttggccatttacggcggacaggatatcgggcgtcaaatccgcgctttgaaaagaaag
cctcagattattatcggtacaccgggtcgattacttgaccacatcaacagaaaaaccatc
cgtcttgatgacgtacaaaccgttgtgctggacgaagcggatgaaatgctggacatgggc
ttcatggacgacatccagtcgatcctcaagctggttccagaagaacgtcaaaccttgctg
ttctccgcaactatgccgcctaacattcagaagctggcatcccagttcctgaacgaacct
gagcatgtatctgttattcctaagcacgttagtgctccactgatcgaccaagcatatatc
gaagttcctgaacgtcaaaaattcgaagccttgagccgccttctggatatggagtcgcct
gagcttgcgattgtcttcggacgtaccaagcgccgtgtcgacgaattggcagaagccctg
caaaaacgcggatattcggcagatggcctccatggcgacctgtcccagcaccaacgtgat
accgtcatgcgtaaattccgcgacggcagcatcgatgtgctcgtggcgacagacgtggcc
gcgcgcggtctcgacgtatccggcgttacccatgtcgtaaactttgacttgccgcaagat
ccggaaagctatgtacaccgtattggacgtacgggccgtgcgggcaaggaaggtacagcc
tggtccttcgtcacgccgcgtgaaatggatcatctgtatttcatcgagcgtgtgacgcgc
caccgtattccgcgcaagccgctgccaacgattgccgaagcgatcgaaggtaagcagcgc
atcatcgctgagcgcgtgcttgaaatcattgagcaaggggaattgaccgagtacaaaggt
cttgccattcaattgctggagcagtacgattccgtacaattgcttgcagctgcaatgaaa
atcctgacaggcgacaagaaggaagcatccgatattcaccttacccctgaggatccgatc
cgcgccaaacgccggaagccggatatccgtaatggccgcaaacctagcggtggttatggc
ggacgcggcaacagcggcggatatcgccgtgacggcggaagcggcggcggtggtaaccgt
ggcggctactccaaaggcggatacagccgagacggcggtggtggttataaccgtgaccgc
gatggcggtggttacaaccgtgaccgcaacaacagcggtgaccgcaaaccgcgttcctac
agcggcggcgagcgtcgtcctaaccggagcggggacgaataa
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