Paenibacillus sp. JNUCC32: JNUCC32_04520
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Entry
JNUCC32_04520 CDS
T11069
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03420
Nucleotide excision repair
pajn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNUCC32_04520
03430 Mismatch repair
JNUCC32_04520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pajn03400
]
JNUCC32_04520
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC32_04520
DNA repair and recombination proteins [BR:
pajn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNUCC32_04520
MMR (mismatch excision repair)
Other MMR factors
JNUCC32_04520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PhoH
Viral_helicase1
SLFN-g3_helicase
AAA_30
AAA_16
DEAD
nSTAND3
ResIII
NACHT
Catalase_C
Motif
Other DBs
NCBI-ProteinID:
QOT11300
LinkDB
All DBs
Position
987052..989382
Genome browser
AA seq
776 aa
AA seq
DB search
MAISDQDWKEEQARVTEVTAKIGNKISQLEASVGDIREVVIDMRKDFWDEVTVNFSNPDD
LGETSTNLRQQSQVLAEREHAHLQSSKLLKKYRKLVESPYFGRIDFQEDGTAETETIYLG
TGSFLDEKMETFLVYDWRAPISSLYYDGAPGPAQYETPSGTVKGEMLLKRQFVIHNGEIK
VLFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAVIRNDKTRMLIVQGAAGSGKT
SAALQRVAYLLYKYRETLRADQMILFSPNPLFNSYVSTVLPELGEDNMQQTTFQSYLEHR
LGKEFDLEDVFTQMETLLNADDSPRYRARLESISYKSSGAYLDTIRRYKELLEKGGMLFK
PVVFQGKVIVSSEEMASQFYGYDSAVKLAGRIDLMKEWMLKRLSEFAQTEKDAPWVEEQI
QLLDTEDYQRAFQTMRRKQNRKADTFDDFDKEKDVLAKMVVSSRLKPLRRWIKRFRYVDV
KGMYRKLYTDESLFRRAAGNLETLPEHWDEICNLTVASLDDKALLYEDATPFLYLKELLQ
GFRTNTSIRHVIVDEVQDYSAFQLEFLKRLFPRAKMTVLGDLNQAIYAHGEALGSLENLV
SLYGEEDTEVINLTQSYRSTYEIVNFTRQMIPGGERIVPFNRQGEAPRVVRVNDEEELHG
AIVSDIRELHEQGFQYVAVICRTEEESRRVHQQLSADISARLITKTTPAFEKGTLVVPAY
LAKGVEFDAVIIYNGAEDVYHRESDRKLFYTACTRAMHKLHVYHIGEKSHFISDQA
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggctatcagcgatcaagattggaaagaggaacaggcgcgggtaacggaagtaacagca
aaaatcggaaataaaatatcccagctggaagcgagcgtcggcgatatccgtgaagtcgtc
attgacatgcggaaggacttctgggacgaagttacggtaaacttcagcaacccggacgat
ttgggcgaaacgtccaccaacctgagacagcagtcgcaggtgctcgccgaacgcgagcat
gctcatctgcagtccagcaagctgcttaaaaagtacaggaagctggtggaatccccatac
ttcggacgcattgactttcaggaggatggaactgcggagaccgaaaccatttatttggga
acaggttcttttttggacgaaaagatggagacgtttctggtttacgactggcgcgcaccc
atctctagcctgtattacgacggtgcgccgggccctgcccaatatgagacgccttcgggt
acggtcaagggcgaaatgctgcttaagcgccaattcgtcatccataacggcgagatcaag
gtgctgttcgataccggcgtgaccatcggagatgaactgctgcagcaggtgctcagccat
agcgcggatgaccgcatgaagagtatcgtggctacgattcagaaggaacagaacgcggtc
atccgaaatgacaaaacccgcatgctgatcgtgcagggggctgccggaagcggaaagacc
tcggctgcactgcaaagggtggcttatctgctgtacaagtaccgggagacgctccgggcc
gaccagatgatcctgttctccccgaatccgctgttcaacagctatgtgtccacggtgctt
cccgagctcggcgaggacaatatgcagcagacgaccttccagtcctatctggagcaccgg
ctcggtaaggagttcgatctcgaagacgtgttcacgcaaatggaaaccctgttgaatgcg
gatgattcgccgcgttaccgggcacgcttggagagcatatcgtataaatcctcgggggct
tatctggacaccatcagacgatacaaggagctgctggaaaagggaggcatgctctttaag
ccggtcgtattccaggggaaggtgattgtcagctcggaggagatggcatcgcagttctat
ggctatgattcggcggttaagcttgctggccgcattgatctgatgaaggaatggatgctt
aagcgcctgtcggagtttgcccagaccgagaaagatgccccgtgggtagaggagcagatc
cagctgctggatacggaagattaccaacgggcctttcaaacgatgagacgcaagcaaaac
cggaaggcagacacgtttgacgatttcgataaggaaaaagacgtccttgcgaaaatggtg
gtcagcagccggctcaagccgcttcgacgttggatcaagcggttccggtatgtggacgtc
aagggtatgtaccgtaaattgtacacggacgaatccttattccgccgggcggcgggaaat
ttggagacgctccctgaacattgggatgaaatatgcaatcttaccgttgcgtccctggac
gacaaagcattgctttacgaagacgccacgccgtttctctatttgaaggaactgctgcaa
gggttccgtacgaatacgtcgatacgccatgtcattgtcgatgaagttcaggattattcc
gcatttcagctggagttcctgaagcgtttgttcccgcgggccaaaatgacggtgctgggg
gacctcaaccaagccatttatgctcatggagaggcactcggaagcttggagaatctggtg
agtctgtatggcgaagaggatacggaggtcattaatctgacccaaagctaccggtcgacg
tatgaaatcgttaacttcacgcgacaaatgataccgggcggggagcggatcgttcctttc
aaccggcaaggcgaagctcctcgagtcgttcgggtgaacgatgaagaagaacttcatggc
gcgatcgtatccgatatccgcgagcttcatgagcagggattccaatacgttgcggtgatc
tgccggacagaagaggagagcaggcgcgtacatcagcagctgtcggcggatatctccgcc
cgcttaatcaccaaaaccacgccggcctttgaaaagggaacgctggtggttcccgcctac
ttggccaaaggcgtggagtttgacgcggtgattatctataacggcgccgaggacgtgtac
caccgggaaagcgatcgtaagctgttctacacggcatgtacgcgtgccatgcataaactg
catgtctatcatatcggggagaagagtcactttatctccgatcaagcttaa
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