Paenibacillus sp. JNUCC32: JNUCC32_05095
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Entry
JNUCC32_05095 CDS
T11069
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn02020
Two-component system
pajn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JNUCC32_05095
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JNUCC32_05095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pajn03021
]
JNUCC32_05095
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pajn02035
]
JNUCC32_05095
Transcription machinery [BR:
pajn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JNUCC32_05095
Bacterial motility proteins [BR:
pajn02035
]
Flagellar system
Flagellar assembly proteins
Stator
JNUCC32_05095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
PhyR_sigma-like
HTH_38
Sigma70_ECF
HTH_23
GerE
CtpB_N-like
HTH_5
Arg_tRNA_synt_N
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QOT11409
LinkDB
All DBs
Position
1107515..1108303
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AA seq
262 aa
AA seq
DB search
MDERKTSVLNHADLWSAWKEDGDHEAKKKLIEYHLHIVDYVSSRLAIGLPKNVSKGDLAS
NGVMGLIDAIEKFDYKRGLQFETYASWRVRGAILDSLRQGDWVPRSVREKAKKIETAYQQ
LEQKYLRSVSDSEMSDYLDVTEKEFRHMLQEVAVMTLTSLEDPIREEESETRMSLLVDEK
AKNPDHKVHEFYLREALMKGIGKLTPKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGALDKDRDLLMQND
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttggacgaacgtaaaacttccgtccttaaccatgcggatttatggagcgcatggaaggaa
gatggagaccatgaagcgaagaagaaacttatcgaatatcatttgcacatcgttgactat
gtttcaagccgattggccatcggtcttccgaagaacgtttctaagggagatttggccagc
aatggggtaatgggtctgattgacgccatcgagaagttcgattacaaacgagggctgcaa
ttcgaaacctatgcctcttggcgggtgcggggtgctattctggattcgctgcgccaaggg
gattgggtaccgcgttctgtccgtgagaaggcgaagaagattgaaactgcatatcagcag
ttggaacagaagtatttacgcagcgtcagtgattccgagatgagcgattaccttgacgtg
accgagaaggagttccggcacatgctgcaggaagtggcggtcatgacattgacatctttg
gaagatccgatccgcgaggaggagtctgagacccgaatgtcgctcctggttgatgagaaa
gcgaagaatccggatcacaaggtccatgaattttatctgcgagaagccctgatgaagggt
atcggtaaattaaccccgaaagagcggaccgtagtttccttattatattatgaggattta
tcactcagcgaaatagctgaagtgatgtcgctatcaccttcacgaatatctcagcttcat
tccaaagcgattttgagacttcggggcgcgctcgataaagatcgggatttgctgatgcaa
aacgattga
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