KEGG   Paenibacillus sp. JNUCC32: JNUCC32_05375
Entry
JNUCC32_05375     CDS       T11069                                 
Symbol
rny
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
pajn  Paenibacillus sp. JNUCC32
Pathway
pajn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pajn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JNUCC32_05375 (rny)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pajn03019]
    JNUCC32_05375 (rny)
Messenger RNA biogenesis [BR:pajn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     JNUCC32_05375 (rny)
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 KH_KhpA-B KH_PNO1_2nd HDOD KH_NusA_2nd KH_2 DUF4083
Other DBs
NCBI-ProteinID: QOT11460
LinkDB
Position
1168962..1170503
AA seq 513 aa
METWIWIIIVLAVAAIFFGFGYFIRKSLAEAKISSAEHAALQIVESAKKEAEALKKETVL
EAKDEVHKIRAEAEKDTRERRNEIQRQERRLLQKEESLDKKIESLERKEEQVANKEKRIE
ETQQQIDAIYKKQTTELERISNLTMEDARSIILSNVEQEVRHETAQMIKEIEQQAKEEAD
KKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIID
DTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT
FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDIVLAKRAGLL
HDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALS
AARPGARRETLETYIRRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFRL
ARDITKTIENELDYPGHIKVTVIRETRAVDYAK
NT seq 1542 nt   +upstreamnt  +downstreamnt
atggaaacttggatctggatcataatcgttctcgctgtagccgctatattctttgggttc
ggttattttattcgcaaatcccttgcagaagctaaaatttccagtgccgagcatgccgct
ttgcagatcgtcgaaagtgcgaagaaggaagcagaagcattgaagaaagaaacggttctc
gaagctaaagacgaagttcataaaatcagagccgaagctgaaaaagacactcgcgagcgc
cggaatgaaattcaacggcaggagcgcagattgttgcaaaaggaagagtcgctggataaa
aaaatagaatctttggaacgtaaagaagaacaagtggcgaacaaagagaaacgaatagag
gaaacccagcagcaaatcgatgcaatttacaagaagcaaacgacagaactggagcgcatc
tccaacctgacgatggaggatgcccgcagcatcattctcagcaatgtcgagcaagaagtt
cgtcatgaaaccgctcagatgatcaaagaaatcgagcagcaggcgaaggaagaagcagat
aagaaatcacgcgagatcatcacgctggctattcaacgctgtgcggctgatcacgtagct
gagaccacggtttctgttgtcaccttgccgaacgaagaaatgaaaggccggattatcgga
cgtgaaggccgaaacattcgtgcgcttgagacccttacagggattgaccttattatcgat
gatactccggaagctgtcattctgtccggatttgatccgattcgccgtgaaattgcccgt
acggctttggaaaagctcgtggcggacggacggattcatccggctcgtatcgaagaaatg
gtggagaaatcccgcaaggaagtggacgaacgcattcgcgagtatggggaacaagccact
ttcgaggttggcgtacacggtttgcatccggatttgatcaaaattctgggtcgactgaaa
ttccgtacgagctatggacaaaatgtgttgaaacactccatggaagtggcctatttgact
ggcctgatggccggcgaactgggcgaagacatcgtgcttgcgaaacgggcaggactgttg
catgacatcggtaaagcgctggatcatgaagtggaaggatcgcacgttgaaatcggcgtg
gagctggcgaagaagtataaggaacatccggtggttatcaacagcattgcctcccatcac
ggtgattgcgaagcaacttcggttatcgccatgctggtgggcgcagccgacgcattgtcc
gctgccagaccgggagcacgcagagagacgcttgagacgtacatccgtcgtcttgagaag
ctcgaggaaatttccgaatcctttgaaggcgttgagaaatcctacgccattcaagcagga
cgtgaagttcgcgtcatggtacagccggaaaaaatcgacgatgccgaagcattccgcttg
gcacgcgacattaccaaaacgattgaaaatgaactggactatccgggtcatattaaagtc
accgttatccgggaaacccgtgcggtcgattacgcgaaatag

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