Paenibacillus sp. JNUCC32: JNUCC32_05375
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Entry
JNUCC32_05375 CDS
T11069
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC32_05375 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pajn03019
]
JNUCC32_05375 (rny)
Messenger RNA biogenesis [BR:
pajn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JNUCC32_05375 (rny)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_PNO1_2nd
HDOD
KH_NusA_2nd
KH_2
DUF4083
Motif
Other DBs
NCBI-ProteinID:
QOT11460
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Position
1168962..1170503
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AA seq
513 aa
AA seq
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METWIWIIIVLAVAAIFFGFGYFIRKSLAEAKISSAEHAALQIVESAKKEAEALKKETVL
EAKDEVHKIRAEAEKDTRERRNEIQRQERRLLQKEESLDKKIESLERKEEQVANKEKRIE
ETQQQIDAIYKKQTTELERISNLTMEDARSIILSNVEQEVRHETAQMIKEIEQQAKEEAD
KKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIID
DTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT
FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDIVLAKRAGLL
HDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALS
AARPGARRETLETYIRRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFRL
ARDITKTIENELDYPGHIKVTVIRETRAVDYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaaacttggatctggatcataatcgttctcgctgtagccgctatattctttgggttc
ggttattttattcgcaaatcccttgcagaagctaaaatttccagtgccgagcatgccgct
ttgcagatcgtcgaaagtgcgaagaaggaagcagaagcattgaagaaagaaacggttctc
gaagctaaagacgaagttcataaaatcagagccgaagctgaaaaagacactcgcgagcgc
cggaatgaaattcaacggcaggagcgcagattgttgcaaaaggaagagtcgctggataaa
aaaatagaatctttggaacgtaaagaagaacaagtggcgaacaaagagaaacgaatagag
gaaacccagcagcaaatcgatgcaatttacaagaagcaaacgacagaactggagcgcatc
tccaacctgacgatggaggatgcccgcagcatcattctcagcaatgtcgagcaagaagtt
cgtcatgaaaccgctcagatgatcaaagaaatcgagcagcaggcgaaggaagaagcagat
aagaaatcacgcgagatcatcacgctggctattcaacgctgtgcggctgatcacgtagct
gagaccacggtttctgttgtcaccttgccgaacgaagaaatgaaaggccggattatcgga
cgtgaaggccgaaacattcgtgcgcttgagacccttacagggattgaccttattatcgat
gatactccggaagctgtcattctgtccggatttgatccgattcgccgtgaaattgcccgt
acggctttggaaaagctcgtggcggacggacggattcatccggctcgtatcgaagaaatg
gtggagaaatcccgcaaggaagtggacgaacgcattcgcgagtatggggaacaagccact
ttcgaggttggcgtacacggtttgcatccggatttgatcaaaattctgggtcgactgaaa
ttccgtacgagctatggacaaaatgtgttgaaacactccatggaagtggcctatttgact
ggcctgatggccggcgaactgggcgaagacatcgtgcttgcgaaacgggcaggactgttg
catgacatcggtaaagcgctggatcatgaagtggaaggatcgcacgttgaaatcggcgtg
gagctggcgaagaagtataaggaacatccggtggttatcaacagcattgcctcccatcac
ggtgattgcgaagcaacttcggttatcgccatgctggtgggcgcagccgacgcattgtcc
gctgccagaccgggagcacgcagagagacgcttgagacgtacatccgtcgtcttgagaag
ctcgaggaaatttccgaatcctttgaaggcgttgagaaatcctacgccattcaagcagga
cgtgaagttcgcgtcatggtacagccggaaaaaatcgacgatgccgaagcattccgcttg
gcacgcgacattaccaaaacgattgaaaatgaactggactatccgggtcatattaaagtc
accgttatccgggaaacccgtgcggtcgattacgcgaaatag
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