Paenibacillus sp. JNUCC32: JNUCC32_05990
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Entry
JNUCC32_05990 CDS
T11069
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JNUCC32_05990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pajn03021
]
JNUCC32_05990 (rpoD)
Transcription machinery [BR:
pajn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JNUCC32_05990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QOT11578
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Position
1294129..1295079
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AA seq
316 aa
AA seq
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MENRQSADFALEREVTDTEKSANSPTEDFSVHDDLSLPPGIKISDPVRMYLKEIGRVPLL
SADEEVELSKRIEEGDEEAKRRLAEANLRLVVSIARRYAGRGMQFLDLIQEGNMGLIKAV
EKFDYSKGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKLVRVSRQLLQELGR
EPTPEEIGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAAA
FELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALR
KLRHPSRSKRLKDFLE
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccgtcagagtgcggattttgcattggaacgcgaggttacggatacagagaaa
tcggctaattctccaacagaggatttttcggttcacgacgatctctcgcttccgccaggc
atcaagattagcgatccagttcgcatgtacctgaaagaaatcggtcgtgttcccctcctc
tcagccgatgaagaagtggaactgtccaaacgtatagaggagggagatgaggaagcgaaa
cgccgtttggccgaagcgaatcttcgtctcgttgttagtatagcaagacgctatgccggt
cgtggaatgcagttccttgatctgatccaggaaggcaacatgggcttgatcaaagcggtg
gagaaattcgactactccaagggctttaagttcagcacctatgccacttggtggattcgt
caggcgattacccgctcgatcgccgaccaggccagaaccatccggattccggtgcatatg
gtggaaacgatcaataaacttgtgcgtgtctccagacagctccttcaggagctgggccgc
gaaccgacgccggaagaaatcggcaaggagatggacatctcaccggagaaagtgcgcgag
atccagaaggtatcccaggaacccgtgtccctggaaacgcctgtcggagaggaaagcgac
tccaacctgggcgatttcatcgaggatcaggatgcgttggcacccgcagatgcggcggct
ttcgagctgctgaaggaacagctggaggaagtgctcgatacgcttaccgagcgtgaagag
aacgtgcttcggcttcgttttggactcgaggacggacggacccgtacgctggaagaggtg
gggcaggtgttcggcgtaacgcgcgaacgcatccgccagatcgaggcgaaggcgctccgt
aaattgcgtcatccgagccgcagcaagcgtctcaaggatttcctcgaataa
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