Paenibacillus sp. JNUCC32: JNUCC32_15690
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Entry
JNUCC32_15690 CDS
T11069
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03022
Basal transcription factors
pajn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JNUCC32_15690
09124 Replication and repair
03420 Nucleotide excision repair
JNUCC32_15690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pajn03021
]
JNUCC32_15690
03400 DNA repair and recombination proteins [BR:
pajn03400
]
JNUCC32_15690
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC32_15690
Transcription machinery [BR:
pajn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JNUCC32_15690
DNA repair and recombination proteins [BR:
pajn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JNUCC32_15690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-ProteinID:
QOT07644
LinkDB
All DBs
Position
complement(3486999..3488786)
Genome browser
AA seq
595 aa
AA seq
DB search
MHNKPCIVQRDRTILLETAHADAEAAREQLAQYADLIKSPASFHTYRLTPLSLWNAAAGG
MSAEAICSSLQSLSRWDVPAALLEEVRQLVGRYGQLSLLSHPTFERALLLSCNEEALMQE
LTSHRSLREIGVRLISPKEAEVPSDRRGVLKQEMTRLGYPVLDHAGYMDGQYLNILWRGE
KSGSERLEDSNGGSNDQRFELRDYQQKAAESFRDIGGEGGNGVLVLPCGAGKTVIGIAAM
RELQCETLILTSNTTSVRQWIAELMQKTTLSVDEIGEYSGQRKQVRPVTVATYHILTHRQ
GKGEEQQHMKLFNERRWGLIIYDEVHLLPAPVFRATADIQATRRLGLTATLVREDGRESD
VFSLIGPKRYEMPWKRLEAQGWIASVTCTEIKVPLPDEIREACEAAGKREQYRLAAENPS
KLDVIRQLVDVHKDAQTLIIGQYLDQLHAISRELQAPLITGQMTQDQRNEWYNAFREGNV
RVLVVSKVANFAVDLPDASVAIEVSGSYGSRQEEAQRLGRLLRPKSGENRAYFYALVTED
SREEIFAIRRQLFLIEQGYEYHAIHAKQPAAFLDLIAMRNPRSYQHPDGKEVSWR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgcacaacaagccttgcatcgtccagcgcgatcggaccatacttcttgaaaccgcccat
gcggatgcggaggctgcgcgcgagcagctagcccaatatgccgatttgatcaaaagtccc
gcgtcttttcatacatatcgcttgacccctttatctttatggaacgccgctgcagggggc
atgtcggctgaagccatttgctcgagccttcagtcgttgtcgcgttgggacgtgccggcc
gccctgctggaagaggttcgccagctcgttgggcgttatgggcagctgtcgctgctctcg
catccaacgtttgaacgtgcattgctgttatcctgcaatgaggaagccctgatgcaggag
ctgacgtcccatcgctccctgagggaaatcggcgtccggttgatttcgccgaaggaagca
gaggtgccttcggaccgccgcggcgtgttaaagcaggagatgacccggctcggctatcct
gtgctggaccacgcgggatatatggacgggcaatacctgaacattctttggcggggagaa
aaatcgggcagcgagcgccttgaagattcgaacggcggatccaacgatcagcggttcgag
cttcgcgactatcaacagaaggctgccgaatccttcagggatattggcggcgaaggcggc
aacggtgtgctggtcctgccatgcggggccgggaaaacggtcattggcatcgccgccatg
cgcgagctgcaatgcgagacgctgatcctcacttccaataccacgtcggtaaggcagtgg
atcgccgagctgatgcagaaaacgacgttgtccgtggatgaaatcggcgaatactccggt
cagcgcaaacaggtcaggccggtgacggtcgctacctaccacatcttgacccaccggcag
ggcaagggggaggagcagcagcatatgaagctgtttaatgaacggcgctggggcttgatc
atttatgacgaggttcatcttcttcccgcaccggtattccgcgcgacggccgacatccag
gcgacccgcaggcttggcctgaccgccactttggttcgcgaggatggaagggagagcgac
gtgttctccctgatcggtcccaaacgatatgaaatgccgtggaaaaggttggaggcgcaa
gggtggattgcttcggtgacctgcacggagattaaggtgccgctgccggacgagatcaga
gaagcctgcgaggcggccggcaaaagggagcaatatcggctggctgccgagaatccctcc
aaacttgatgtgattcggcagctcgtggatgtccacaaggatgcgcagacgctcatcatt
ggacaataccttgatcagctccatgccatttccagggagctgcaggccccgctcatcacg
ggacaaatgacccaggatcagcgcaacgaatggtataacgccttcagggaaggaaacgtt
cgcgtgcttgtcgtatcgaaagtggcaaacttcgcggtcgatctgcccgatgcttccgta
gcgatcgaggtttcgggcagctacggctcgcggcaggaggaagcgcagcggcttggacgt
ttgctgcggccgaagtcaggggagaatcgggcttatttttatgcattggtaacggaggac
agccgggaggagatctttgcgatccggcgacagctgtttctgattgagcaggggtacgaa
tatcacgcgatacatgcaaagcagccggcggctttcctggatctgatcgcgatgcgaaat
ccccgttcctatcagcatcccgacgggaaggaggtctcgtggagatga
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