Paenibacillus sp. JNUCC32: JNUCC32_16500
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Entry
JNUCC32_16500 CDS
T11069
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JNUCC32_16500 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pajn03021
]
JNUCC32_16500 (rpoD)
Transcription machinery [BR:
pajn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JNUCC32_16500 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QOT13546
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Position
complement(3655205..3656335)
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AA seq
376 aa
AA seq
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MANDQHTELETEFTLDQVKDQLIEQGKKRSVLSYKDIMEKLSPFDQDTEQMEEFYEQLAD
LGIDVVNENDEEGPHRQSGDSESHDNEDFGFDDDLSLPPGIKINDPVRMYLKEIGRVPLL
SADDEIELANRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAV
EKFDYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR
EPSPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAA
YELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR
KLRHPSRSKRLKDFLE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagaaacggaatttacgctggatcaagtcaaggat
cagttgattgaacagggtaaaaagagatccgtattaagctataaagatattatggagaaa
ttgtcgccatttgatcaggacacggagcagatggaagagttctatgagcagctggccgac
ctgggcatcgatgtggtaaatgaaaatgacgaagagggccctcaccggcaatcgggagat
tccgaatcccatgataatgaggattttggatttgacgacgatctttcactgcctccgggg
atcaagattaacgacccggttcggatgtacctgaaggaaattggacgggttccgctgttg
tccgcggatgatgagatcgagcttgccaaccggattgaacagggagatgaagaagccaag
cgccgtctggccgaagccaacctgcgtctcgtcgtaagtattgcgaagcgttatgtgggt
cgtggaatgctgttcctggatttgattcaggagggcaacatgggtttgatcaaagccgtg
gagaaattcgattacaaaaaaggcttcaaattcagtacgtatgcgacttggtggattcgc
caagcgatcacgcgcgcgatcgcggaccaggcccgtaccatccgtattcccgtgcatatg
gtagagaccatcaacaagctgattcgtgtatccagacagcttctgcaggagcttggacgt
gagccttcgccggaggaaattgctgcagagatggaactcagcgttgagaaagtccgggag
atcatgaagattgcccaagaaccggtttcgctggaaacgccgatcggcgaagaggacgat
tcccatcttggggatttcatcgaggatcaggaagcactcgctcctgctgacgcggctgcg
tacgagcttctgaaggaacagctcgaggatgtgctggatacgctgacagagcgcgaggag
aatgtccttcgccttcgtttcggactcgatgacggccgcacaagaacgctggaagaggtc
ggcaaagtattcggcgttacgcgtgaacggatacggcagatcgaagccaaagcgctccgt
aagcttcgtcacccgagccgcagcaaacggttaaaggattttctcgaatag
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