Paenibacillus sp. JNUCC32: JNUCC32_17560
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Entry
JNUCC32_17560 CDS
T11069
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JNUCC32_17560 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pajn03400
]
JNUCC32_17560 (ruvB)
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC32_17560 (ruvB)
DNA repair and recombination proteins [BR:
pajn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JNUCC32_17560 (ruvB)
RecFOR pathway proteins
JNUCC32_17560 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Mg_chelatase
TIP49
AAA_16
AAA_14
AAA_22
nSTAND3
NB-ARC
RNA_helicase
NTPase_1
AAA_18
DUF815
AAA_3
TsaE
Rad17
Bac_DnaA
Resolvase
AAA_24
Sigma54_activat
Sigma54_activ_2
AAA_2
AAA_28
AAA_17
AAA_25
ABC_tran
NPHP3_N
NACHT
AAA_33
IstB_IS21
bpMoxR
ATPase_2
Parvo_NS1
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
QOT07992
LinkDB
All DBs
Position
complement(3904526..3905533)
Genome browser
AA seq
335 aa
AA seq
DB search
MDDRIISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLLYG
PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRTV
EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE
FYTVDELSYIVSRNADLLGIEILGEAAEEIALRSRGTPRIANRLLKRVRDYAQVRGDGMI
TPSIAQEALKMLQIDPMGLDFIDHKMLNAMIKSFRGGPVGLDTIAATIGEESQTIEDVYE
PYLLQIGYLQRTPRGRVVTPTAYQYLGIPFPEDRR
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcgaattatttccgccaatctgatgatggacgaacaggctgtcgaacttagt
ctgcgtccgcgttatttggctgaatatataggacagaatcaagtaaaggaaaatttgaag
gtatatatcgaggctgcaaaaatgcgcaacgaggcgcttgaccacgtgctgctgtacggt
cctccgggacttggcaaaacgacgctggccaatattatcgccaatgagcttggcgttaat
ctgcggacgacgtccggcccggccatcgaacggcctggcgatctggcggcacttttgacc
aatctgcaggaaggagacgtcctgtttattgacgagatccaccggctgcaccggacggtg
gaggaagtgatgtatccggccatggaggattttgcgctggatattatgatcgggaaaggg
ccaagcgcacgctccgttcgcctggatcttccgccgttcaccctaattggcgccactacc
cgggctggcctgctctcagcgccgctgagggaccgttttggtgtagtaagccgtctggaa
ttctatacggtagatgagctgagctacattgtgtcccgcaatgctgatcttttggggatc
gagatattgggagaggctgcagaagagattgccctaagatctcgggggacaccgcgcatt
gcgaaccgcctcttgaagcgggtacgcgattatgcgcaagttcggggcgacggcatgatc
acgccaagcatcgcgcaggaagctctgaagatgctccaaatcgatccgatgggcctggat
tttatcgatcacaaaatgctgaacgccatgatcaagagcttccgcgggggacctgtggga
ctggataccattgccgcaaccatcggggaagaaagccaaaccatagaggatgtttatgaa
ccgtatcttctacagatcggttatttgcagcgtacgcctcggggacgcgtcgtaacgcct
acagcttatcagtatttaggcattccctttccggaggatcgccgctaa
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