Paenibacillus sp. JNUCC32: JNUCC32_22280
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Entry
JNUCC32_22280 CDS
T11069
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03420
Nucleotide excision repair
pajn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNUCC32_22280
03430 Mismatch repair
JNUCC32_22280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pajn03400
]
JNUCC32_22280
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC32_22280
DNA repair and recombination proteins [BR:
pajn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNUCC32_22280
MMR (mismatch excision repair)
Other MMR factors
JNUCC32_22280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
YdjO
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
QOT08870
LinkDB
All DBs
Position
5022648..5025116
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AA seq
822 aa
AA seq
DB search
MTSIPFYKRPYGGERQDIPFAKLASFENSRDLIRDDAPDAAFFRGLESQGLLLNRAQIQA
VRHTQGPLLTLAGAGSGKTSVLVSRTGYLIAAKSVDPSSILLVTFSSKAAAEMKERIMAL
PGLRSSETAKVTARTFHSFFLYLLRTRGYKQEILSNARHQQFIMKRILREMGLQDSYEAE
TLLSLWSAHRMSMTGLDELPVKTPAEVEQRQIFARYEAWKEEHGQMDFDDILVLSYRLLS
HDSGLLASLQRRYRYVMVDEFQDTGLLPYELLKKIVAPHRNLMVVGDDDQTIYGFNGARN
EFILEFDQTFPGAKVVTLDINYRSLSSIVGLGNEIIRVNERRRPKQLRSTRKSSCVPLYL
RPGDPDQEAELLLTHITEQVREHGKQYRDHAILYRTANNSRAIFEQLVMREIPFIHYENG
DLFYEQWIVKPLMDHLRLSLDRRNFTAMEGMLHTLYINRDKGMAFIRQQDAPRPKKGPLS
HLLSFPGLKDFQIENIRERSKLIKSLKAMEPLQAVQEMRRQFYDKFLEADERQEITLHKE
FIQEGLDELEASAKRFGDIAEFVGFVDRLIIIHKEMAAMKRDEHADAVRLMTIHKSKGLE
FPSVCLIGASEGILPHTSALDAERRDDQRPLSDKEDKALDALEEERRLAYVAITRARDEL
VISSPGFYRGRKAEVSRFFRDVFLTDEQSKQGNSIPNKGAGSAARTAFTAQRTIRIETSA
KPSSPSASAGRRTGSAVNQTSQRFGSGSRSGSSSAPEPQSPAAPAATEIVDVWLCTSPNC
KGWQRVNARIPVNTRDRESKSCPLCQAPMKQGRKEVPVHHRR
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgacatccatacccttttataaacgcccgtacggcggtgagcgtcaggatattccgttt
gcgaagctggcttccttcgagaacagccgggacctgatccgcgatgacgcgccggatgcg
gctttttttcgcggcttggaatcccagggactgctgctgaaccgcgcccagatccaagcc
gtacgacatacgcaaggaccgctgcttacgcttgctggcgcaggctccggcaaaacctcc
gtgctggtcagccggacaggctaccttattgccgccaagagcgtcgacccttcttccatc
ctgcttgtcaccttctcctccaaggcggcggccgagatgaaggaacgcatcatggcgctt
cccggcttgaggtccagcgaaacagccaaggtaacggccagaaccttccattccttcttc
ctgtacttgctgcgaacccgcggctacaagcaggaaatcctgagcaacgccaggcatcag
caatttatcatgaagcgcattctgcgggaaatgggcttgcaggatagctacgaagccgag
acgctgctatcgctgtggtccgcccatcggatgagtatgaccggacttgacgagctgcct
gtcaaaacgcctgccgaggttgaacagcggcagatttttgcccggtatgaagcatggaag
gaagagcatggccagatggatttcgacgacattctggtcttgtcctatcgtctgctgtcc
catgattccggactgctcgcctcccttcagaggcggtaccgttatgtcatggtggacgag
tttcaggatacgggactgctgccttatgagctgctcaaaaaaatcgtcgccccgcaccgc
aatttaatggttgtgggtgacgatgaccagaccatatacggcttcaacggggcgcgcaac
gaattcattctggaattcgaccagacgtttcccggggccaaggtcgtgacgctcgatatc
aattaccgctccctctcctcgatcgtcggactggggaacgaaattatccgcgtcaatgaa
cggcggcgccccaagcagctgcggtcgacccgcaagagcagctgcgtgccgctctacctt
cgacccggcgatcccgatcaagaagcggagctgctgctgacccatatcaccgagcaggtc
cgggagcacgggaagcagtaccgcgaccatgccattctctatcgcaccgcaaacaacagc
cgggcgatcttcgagcagctcgtgatgcgggaaattccgttcatacattatgagaatggg
gatctgttctacgagcagtggatcgtcaagccgctcatggatcatctgcggctgtcgctg
gaccggcgcaatttcacggcgatggagggcatgcttcatacgctgtacatcaaccgcgac
aagggcatggctttcatccggcagcaggatgctccgcggcccaagaaagggcctctgtcg
caccttctttccttccccgggctgaaggatttccagatcgagaatataagggaacgctcc
aagctcatcaagagcctgaaggcgatggagccccttcaagccgtgcaggaaatgagacgc
caattctacgacaaattcctggaggccgacgagcggcaggagattaccctccataaggaa
ttcattcaagaagggctggatgaactggaggcttccgcgaagcgctttggcgatatcgct
gaattcgtcggatttgtcgaccggctgatcatcatccataaggaaatggcggccatgaaa
cgggatgagcatgccgatgccgtccgcttaatgaccatccataaatccaaggggctggaa
tttccctccgtgtgcctgattggagctagcgaaggcattctgccgcatacgtccgctttg
gacgccgagcgcagggacgatcagcgcccgctgtcggacaaagaggataaagccttggat
gcgctggaagaggaacgcagattggcttatgttgccatcaccagagcacgggatgaactg
gtgatcagctccccgggcttttatcgcggacggaaagcggaggtttcccgcttcttccgg
gacgtgttcctcacggatgaacagagcaaacagggcaacagcataccgaacaagggcgca
gggtcagcggcccgcacagcctttacggcgcaacgtacgatccgcatagaaacctcggcc
aagccttcatcgccttccgcttctgccggacgaaggaccgggagcgccgttaaccagacg
agccaacgtttcggttcaggttcacggtcagggtcgagctctgctcccgagccgcagtct
ccggctgctcccgcagcgacggaaatcgtcgacgtatggctgtgcaccagccctaattgc
aagggctggcagcgagtcaacgcacgtatccctgttaacacaagggatcgggagagcaag
tcctgtccattatgccaggcacccatgaaacagggtcgcaaagaagtcccggtgcatcac
aggcgctag
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