Paenibacillus sp. JNUCC32: JNUCC32_24485
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Entry
JNUCC32_24485 CDS
T11069
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC32_24485 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pajn03021
]
JNUCC32_24485 (rho)
03019 Messenger RNA biogenesis [BR:
pajn03019
]
JNUCC32_24485 (rho)
Transcription machinery [BR:
pajn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JNUCC32_24485 (rho)
Messenger RNA biogenesis [BR:
pajn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JNUCC32_24485 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
ATPase_2
OB_RNB
AAA_22
S1CSD-TOTE-2
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QOT09268
LinkDB
All DBs
Position
complement(5543918..5545246)
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AA seq
442 aa
AA seq
DB search
MDLQIADLEGMKLTDLYKLAKKYQIPYYGQLKKKELIFAILRAQAEQSGLMFMEGVLEIL
PEGYGFLRPINYLPSTEDIYISASQIRKFDLRTGDLVSGKCRTPKENERYFGLLQVNAVN
GENPAVAAERLHFPALTPLYPQEKLVLETSPNQLSTRIMDLLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLSRALRLVEHKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGS
ARNVEEGGSLTILATALVETGSRMDDIIYEEFKGTGNMELHLDRRFAERRIFPAIDIRRS
GTRREEVLLNKDELDTIWAIRKNMNDSADFVEGFLKKMRDSKNNAEFLASFDVNANNGGG
TGTQGQTARRPSRASAATAPQS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggatttacaaatagccgatttggaaggcatgaagctgacggatctgtataagctggcc
aagaagtatcagattccttattatggccagttgaagaaaaaagaattgatatttgccatt
ctccgggcgcaggccgaacagagcggcttgatgttcatggagggcgtactcgagattttg
ccggaaggatacggttttctgagaccgatcaactatttgccgagcacggaggatatctac
atttcggcctcccagatccgcaaattcgatttacggaccggagatttggtttctggcaaa
tgccggacgccgaaagagaacgaacgttacttcggactgctgcaggtcaacgccgtgaat
ggcgagaatcctgccgtcgcagcggaacgactacacttcccagccttgactcctctatat
ccgcaagaaaagcttgttcttgaaacatcccctaatcagttgtcaacccgaattatggat
ctgcttgcacccgtaggtttaggacaacgcggtttgatcgtggcaccgccaaaagcaggg
aaaacgctcctcttgaaagaaatcgccaacagcatctcaaccaacaatccagagattgaa
ctgtttgttttactcatcgatgaacggcctgaagaagtgacggatatgcagcgttccgtt
aagggtgaggtggttgcttctacttttgacgagcttccggagaaccatatcaaagtggcg
gaactggtattgtcgcgcgccttgcggctggtggagcataagaaggacgtggttatcttg
ctggacagcatcacccgtctggctcgtgcgtacaacctggtcattcctccgtccggccga
acgctgagcggcggtattgatcctgcggcattccatcgtccgaaacgtttcttcggatcg
gctcgtaacgtggaggaaggcggaagtttgacgatcctggcgacagccttggttgaaacc
ggatcgcggatggatgatatcatttatgaggaatttaaaggcacaggcaacatggagctg
cacttggaccgccgcttcgcggaacgccgtattttcccggcgatcgatattcgtcgctcc
ggtacccggcgcgaagaggtgctgctgaacaaggatgaactggataccatttgggcgatc
cgcaaaaatatgaacgactctgccgattttgtggaaggcttccttaaaaaaatgcgtgat
agcaagaataacgcggagttcttggcatcatttgacgtgaatgccaacaacggcggcgga
accgggactcagggccagacagccagacgtccatcgcgtgcatctgcggcgacggcccct
cagagctaa
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