Paenibacillus sp. JNUCC32: JNUCC32_24890
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Entry
JNUCC32_24890 CDS
T11069
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNUCC32_24890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pajn03400
]
JNUCC32_24890 (mfd)
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNUCC32_24890 (mfd)
DNA repair and recombination proteins [BR:
pajn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JNUCC32_24890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
SecA_DEAD
AAA_16
NIL
Motif
Other DBs
NCBI-ProteinID:
QOT09343
LinkDB
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Position
complement(5634012..5637539)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIDVFSKDSDFKSITSGVHAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHN
MFSAQKIADDLQEALSSDQVLLYPANELVAAESAVSSPETLAQRIDVLVRCARGFRGIVV
APFSGVRRLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMGYERVERVERRGEMSVRGG
IIDFYPMTTAMAYRVELFDEDIDSIRTFDPTDQRSIDKVREVMITPCKEIIADAERLSRT
ADTVVRLLEAQLERMSDRQAKLRLRDEIHREVEMLRERIYFPEIYKYISLLYPEKTNLYD
YMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLPDLPLSLDTEELIYQHPYQ
SLMISIFLRQVPRMQPQNIVNVITRGMQDFHGQMNVLKAEMERWKKSGVQVMMLAGDAER
MDRMRRVLQDYGIEEPVMLEGHLQNGFEMPSVHAAIITESEMFSSKQRKTRKTTKNMDNA
ERIKSYTELKVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQSAPGYGFEKDTS
EQQEFEDMFPYDETPDQLRAITEIKKDMEQNRPMDRLLCGDVGYGKTEVAVRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFANYPINIQVLSRFRSRKEQNETIKKVKQGSVDILI
GTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSKDWNTSIDLG
IDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESAELEDELLDRFGELPLAVSNLLAVSRLK
VYGRTYGIDSITQRGDDVLLQFYEGQDKAVDTAGLAQIGNQFERRVQFEQGPAMAIRIKG
KGLSDQQLLELLEQFLEAAQGPFNLKGELQNAVKK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattgatgtattttcgaaggattcggacttcaaatccataacgtct
ggcgttcatgccggcatgagggagcaattgatctccggtctttccgggtcgtccaggcag
atcttaatggctgccctgcaccaggaccagcagcgcccgctgctcgtggtcactcataat
atgttttcagcccagaaaatcgcagatgatttacaggaagcgctgtcatcggatcaagtg
ctgttataccctgcgaatgaactggtggcggcggagtcggccgtttcaagccccgagact
ctggcgcagcggatcgatgtgctcgtccgttgtgcaagaggcttccggggtattgtcgtt
gcgccattttccggcgtgcgccgccttctccccgctcccgaggtgatgtccgatgcccga
atcgtgcttcacgacggcgggaccctcgtgttggacgccttcctcaaccggatgatcgag
atggggtacgaacgcgtggaacgggtagagcgccgcggcgagatgagcgtccgcgggggg
atcatcgacttctacccgatgacaacggccatggcgtaccgtgtcgagctgtttgatgag
gatatcgactcgatccgaacctttgatccgacggatcagcgctctatcgataaggtccgg
gaggtcatgatcacaccgtgcaaggaaatcattgcggatgcggagcggctcagtcgcacg
gcggatacggtggtccgcctgctggaggcgcagcttgaacgcatgagcgaccgtcaggcc
aagctccgcctgcgggatgaaatacaccgggaagtcgaaatgctgcgcgagcggatctac
ttccctgaaatctataaatatatctccttgttgtatccggagaagaccaatttgtacgat
tacatgccgaaggatacgattctgatcatggatgagcctgcccgtctgctggaaacagcc
aagcagttggagcgggatgaagcggaatggaatttgcatctgatgcaaaacggcaaatcg
ctgccggatctgccgttgtccctggatacggaggagctgatttatcagcatccttaccag
agtctgatgatctccatcttcctgcgccaggtgccgagaatgcagccgcagaatatcgtc
aatgtcattacgcgcggcatgcaggatttccatggccagatgaacgtgctcaaggccgag
atggaacgctggaagaagtcaggcgtccaggtcatgatgcttgccggcgatgcggagcgg
atggaccggatgcggcgggttctgcaggactacggcatcgaagaaccggttatgctggaa
ggccatctccagaacggcttcgagatgccctcggttcacgcggccattattacggagagc
gagatgttctcctcaaagcagcgaaaaacacgcaaaaccacgaagaatatggacaacgcc
gagcgcatcaagagttatacggagctcaaggtcggcgattatgtagtgcatcaaaaccac
ggcatcgggaaatatatggggatcgggacgctcgaaatcaacggaatccataaggactac
atgcatattctctatgctgggggcgataagctatccgttccgatcgaacagatcgatctc
atccagaaatatgtaggttccgaggataaggagccgaaggtttacaagctgggcggaaat
gaatggacgcgggtcaagaacaaggttcgttcctccgttcaggatatcgccgacgatctg
atcaagctgtatgccgagcgtcagtctgcgccggggtacggatttgagaaggatacgtcc
gaacagcaggaattcgaggacatgttcccttatgatgaaacccccgatcagcttcgggcc
attaccgaaatcaaaaaagacatggagcagaaccggccgatggaccggctcttatgcggt
gacgtcggttacgggaaaacggaagtggcggttcgcgctgcattcaaggcggcgatcgaa
ggcaagcaggttgcggtactggtaccgaccacaattttggcccagcagcattacgagacg
ttccgggagcgcttcgccaattacccgatcaatatccaggtgttgagccgtttccgcagc
cggaaggaacagaatgagacgatcaaaaaagtgaagcagggctcggtcgatattctgatc
ggcacacaccgactcctgtctcaggatattgtgttcaaggacctggggctgctgatcgtg
gatgaggagcagcgctttggcgttacgcataaggaaaaattgaaaaagctgaagaccaat
gtcgacgtgctgacgctgacggcaacgccgattccgcgcacgctgcatatgtcgatgctc
ggcgttcgggacttgtccgtgatcgagacgccgccggagaaccgttttccggtgcagacg
tatgtcgtggagcatagccagaccttggtgcgggaagccattgaacgggagctggcccga
ggtggccaggtatactatctctacaatcgggttcaagggatccaagagatggcagcccag
atatcgatgctggtgccggaggcccgcgtaggcgtagggcatggccaaatgtcggaaacg
gagctggagaagaccattctcgatttcctggacggcgaatacgacgtattggtgagcaca
agcattatcgagacgggtgtcgacattccgaatgtcaacacgcttatcgtgcacgacgcc
gacaaaatgggcctctcccagctgtaccagctgcgtgggcgcgtcggacgttccaaccgg
atcgcgtatgcctatttcacgtaccagcgggataaggtgctgaccgaagtagccgagaag
cggctgcagtcgattaaagagtttacggagctgggctccggattcaagattgcgatgcgg
gacttgtcgatccgcggagcgggcaacttgctcggggcggagcagcatggcttcatcgct
tcggtcgggtttgacctgtattcacagatgctggcagaggagattcagaaacgcaaagtc
agcatgctgggcgagccgtcattgccgtcgaaggactggaacacgtccatcgatttgggg
attgacgcttacctgccgtccgattacatctatgacagcattcagaagatcgaaatttat
aaaaaagtggccgtcgtttcctcgatcgacgaatcggctgagcttgaggacgagctgctt
gaccgctttggcgagctgccgctggcggtaagcaacctgcttgccgtatcccgtttgaag
gtatatggccgtacgtacgggatcgattccattacccagcgcggggacgacgttctcctg
cagttttatgaagggcaggataaagcggtggacaccgcagggcttgcgcaaattggaaat
cagttcgaaagacgtgtacaatttgaacaagggccggcgatggccattcgaatcaaaggc
aagggactatccgatcaacaactgttagaattgcttgagcaattcctggaggctgcacaa
gggccattcaacctgaagggagaactacaaaatgccgtcaagaaataa
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