Paenibacillus sp. JNUCC32: JNUCC32_26920
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Entry
JNUCC32_26920 CDS
T11069
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pajn Paenibacillus sp. JNUCC32
Pathway
pajn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pajn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC32_26920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pajn03019
]
JNUCC32_26920
03009 Ribosome biogenesis [BR:
pajn03009
]
JNUCC32_26920
Enzymes [BR:
pajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNUCC32_26920
Messenger RNA biogenesis [BR:
pajn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNUCC32_26920
Ribosome biogenesis [BR:
pajn03009
]
Prokaryotic type
rRNA helicases
JNUCC32_26920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QOT09724
LinkDB
All DBs
Position
6090701..6092317
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AA seq
538 aa
AA seq
DB search
MLNKLNEVERLPNFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGT
GKTLAFMLPILQHIDPKRAYPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQ
DVEKQLRKLEGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEAL
IHALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSK
QDALRAMIEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFR
EAKLQLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGK
DLNDLQRIEEGISQRLKRVRYDSAAGSLRESSGGSGRDTGRPKKARNVSSLESDNERGQG
RSRADRGTGSGRSRGNEQGRGRAGSSRRDDRDSGRTGGRTGEGRGPSAAGGRGSGAREGG
RAGEGRGPQAGARGSSRGPSRTEGRGNHAGRGGQGGTRSSEGRAARGQSGGRRGGRSR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataaattaaatgaggtggaacgtttgccgaactttcaacagctgggcattgac
gaacaaagagtacgaaaactgaaggagcagggaattacggaaccgactccggtacagcaa
gagagcattccgctgctgctgcagggaaaggacgtcattgcccgggcgaagaccggcaca
ggcaagacgctggctttcatgctgccgattctgcagcatatcgatcccaagcgggcgtac
ccgcaggcgctcatcgttgcgccgacacgggaattggcattgcaaattacggaagaagcc
aagaagctgacggcaggagagccggatggcatcaaaattctggcggtctatggcgggcag
gacgtggagaaacagctgcgcaagcttgaaggcggacgccaattgatcatcggcacgccg
ggccggctgctggatcatttgcgccgaggcacgttagagcttggcggcgtgaagcagctg
gtgctggacgaagccgaccagatgctgcatatgggctttttggatgaagtggaggcgctg
atccatgcgcttccgtatcggcgccaaacgatgctcttctcggcgacgatgcctgccggc
gtgaagcagcttgccggcaattatatgaatcaacctgtcgatatcgtgattaagggggct
tccccgatcccgctggagcagatccagcaggtggtggtcgagtgtacggaccgttccaaa
caggatgccttacgcgcaatgatcgaagagcataatcccttcctcgcgatcatcttctgc
cggacgaagcgcagagccaccacgttgaacgaggccctgctggcccatggctaccaatcg
gacgagctgcacggggatctgtcccaggcgaaacgggaagcggtcatgaagcgattccgg
gaagccaagctgcagctgctcgttgcaacggatgttgccgcgagggggctggacgtcgaa
ggcgttacccatgtctttaactacgatatgccccatgatgttgaaagttacatccatcgt
atcggccggaccggacgggcggggggtagcggtatggccatcacgtttgcggccggaaaa
gaccttaatgatctgcagcgcatcgaagaagggatctcccagcggttgaagcgagtacgc
tatgactctgccgccggaagccttcgggaaagctctggcggctcgggcagggatacgggc
cgaccgaagaaagcaagaaatgtctcgtcacttgaatccgataatgaacgtggtcaaggc
agaagccgtgccgatcggggcacgggttccgggcgtagccgcggtaacgagcagggcaga
ggaagggcaggatcatcgcgtagggatgaccgcgattcgggccggacaggaggccgtacc
ggagagggtcgaggaccatcggcggccggaggccgaggcagcggcgcgcgtgaaggcggt
cgtgcaggcgagggccgcggaccgcaggccggagcacgaggcagcagccgcggaccgtcc
agaaccgaggggcgggggaatcacgccggccgcggcggacaaggcggaacccgatcctcc
gaaggccgcgctgccagaggccaaagcggtggacgacgcggcggtcggagccgctag
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