Photorhabdus akhurstii: B0X70_02800
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Entry
B0X70_02800 CDS
T07392
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pakh
Photorhabdus akhurstii
Brite
KEGG Orthology (KO) [BR:
pakh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pakh03016
]
B0X70_02800
Enzymes [BR:
pakh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B0X70_02800
Transfer RNA biogenesis [BR:
pakh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B0X70_02800
Prokaryotic type
tRNA splicing ligases
B0X70_02800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QXF36130
UniProt:
A0ABX8M1M1
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All DBs
Position
complement(631097..632320)
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AA seq
407 aa
AA seq
DB search
MTNDYELITAPNSVPVKMWTHGVPVEAEAREQLLNTAKMPFIFSHLAVMPDVHLGKGSTI
GSVIPTRGAIIPAAVGVDIGCGMMAVCTSLHAKDLPDNLYAIRHAIEIAVPHGRTANRSD
KDKGAWQQPPKTVDHHWSVLQTGFKRLTDKYPQLLKTNNQQHLGTLGTGNHFIELCLDES
DRVWVMLHSGSRGVGNAIGNLFITLAQQDMKQHIANLPDRNLAYFEEGSRHFADYIEAVG
WAQNFARHNREVMMQHTLAALATVITKPFTAIMEAVNCHHNYVQQEQHFGQNVLVTRKGA
VAAHQGVMGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRVLSRTAAKKRFTIEDQKRAT
AHVECRKDSDVIDEIPMAYKDIEAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
ataacaaacgattacgagttgataaccgcgccaaacagtgtaccagtgaaaatgtggact
catggtgtaccggtagaagcggaagcgcgtgaacaactgttgaacacagcaaaaatgcct
ttcatattcagccacttagccgttatgcctgatgtacatcttggtaaaggttcaaccatc
ggcagtgtcattccaactcgtggggcgattattccagccgcagtaggcgtagatatcggc
tgtggcatgatggcagtatgtacctcattgcatgccaaagatttaccggacaacctatat
gctatccgtcatgctattgaaattgccgtaccacacggacgcacagcaaaccgtagtgat
aaggataaaggcgcttggcagcaaccgccaaaaaccgtcgatcaccattggagcgtgttg
cagaccggatttaaacggttaaccgataaatatccacaattactgaaaactaataaccaa
cagcacttagggacactaggtaccggtaatcatttcattgagctgtgtttggatgaatct
gaccgggtatgggtaatgctgcatagtggatcacgcggtgtaggaaatgccattggcaat
ctatttatcactctcgcccaacaggacatgaaacagcatatcgctaacctgcctgaccgt
aacctggcctattttgaggaaggcagccgtcactttgccgactatatagaagcggtcggt
tgggcgcaaaacttcgcccgccataatcgcgaagtcatgatgcagcatacattggcagca
ctggcgacggtaataacaaagccgttcactgccataatggaagcggtaaattgtcaccac
aattatgtgcaacaagagcaacacttcggccaaaacgtgttagtcacacgtaaaggtgcg
gtcgcagcacaccaaggcgtcatgggcatcattcctggctcaatgggtgcgaaaagcttt
attgtacgtggtctgggaaatgaacagagtttttgttcatgcagtcacggcgctggccga
gtattaagccgcacagcagcgaaaaaacgcttcacaatagaggatcagaagcgtgccacg
gcacacgtggaatgccgcaaggacagcgacgtcatcgatgaaattccgatggcctacaaa
gacattgaggccgtaatggccgctcagtcttcactagtagaaatcgttcacaccctgcgt
caagtggtttgcgtaaaaggataa
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