Photorhabdus akhurstii: B0X70_23340
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Entry
B0X70_23340 CDS
T07392
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pakh
Photorhabdus akhurstii
Pathway
pakh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pakh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0X70_23340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pakh03019
]
B0X70_23340
03400 DNA repair and recombination proteins [BR:
pakh03400
]
B0X70_23340
Enzymes [BR:
pakh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0X70_23340
Messenger RNA biogenesis [BR:
pakh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0X70_23340
DNA repair and recombination proteins [BR:
pakh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B0X70_23340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QXF35805
LinkDB
All DBs
Position
complement(5391497..5393323)
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AA seq
608 aa
AA seq
DB search
MSTAEVINTISLTEQVLRKTFGYLQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIP
ALVQEGVTLVVSPLISLMKDQVDQLRANGVAADCLNSTQAREQQIDVIRRCRQGMVKLLY
IAPERLMMDNFLEQLLEWQPAMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIAL
TATADETTRNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKPLDQLWLFIRGQKGKSGI
VYCNSRNKVEEISERLQKRGLSVAPYHAGLDNSQRARVQDAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKEAGTQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGESKQTPCGNCDICLDPPKNYDGLVDAQKAL
SCIYRVGQRFGIVYIVEVLRGANNQRIRDMRHDNLPVYGIGKEQSQEHWISVLRQLIHLG
FISQNIANYSALQLTEAARPILRGEVSLKLAVPRIQNLKGRNQQSKSYSGNYDRKLFAKL
RRLRKSIADEENIPPFVVFNDVTLIEMAEQCPVTADEMLLINGVGQRKLERFGNVFMALI
CEHLEELE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctaccgcagaggtcattaatacgatatcactgacagagcaggtattgcggaaaacc
tttggttatttgcaattccggcctggccagcaacaagttatcaataccattcttgaaggg
cgtgactgtttggtcattatgccgactggtggcggtaaatcattgtgttaccaaattccg
gcgctggtacaggaaggggtaactttggttgtttcgccgttgatctctttaatgaaagat
caggtggatcaactgcgggcaaatggcgttgcggcggattgcttgaattcaactcaggcc
cgtgaacagcaaattgatgtaatccggcgttgccgtcagggaatggttaaattgctgtat
atcgcccctgagcgcttgatgatggataacttccttgagcaacttctggaatggcaaccc
gcaatgctggctgtggatgaagctcattgtatttcacagtggggccatgatttccggccg
gaatatcgggcgttgggacagctaaggcaacgctttccgacattacctgtcattgcgttg
acggcgaccgcagatgaaactacccgcaatgatattgtccgactactgaatcttaataat
ccacttatccatatcagcagttttgaccgtcccaatatccgttataccttgatagaaaaa
tacaaaccattagatcaactgtggctatttattcgcggtcaaaaaggtaaaagcggcatt
gtttactgcaacagccgtaacaaagttgaagagatatcagagcgtttacaaaaacgtggt
ttaagtgttgcgccataccatgccgggttggacaacagccagcgtgcgcgggtgcaggat
gcatttcaacgtgatgatttgcaggtagtggtggcaaccgtggcatttggtatgggaatt
aataaacctaatgttcggtttgtggtgcatttcaatattccacgtaatatcgaatcctat
tatcaggaaacgggacgtgctggacgtgatggtttgccggcggaagcggtgctgttttat
gatcccgcggatatggtatggcttcgccgttgtctggaagagaaagaggcgggtacacag
caggatattgagcggcataagctcaatgcgatgggggcttttgccgaagcacaaacttgc
cgccgtctagtgttattgaactactttggtgaaagtaagcaaaccccttgtggtaactgt
gacatctgccttgatccgccgaaaaattatgatggtttagtggatgcccaaaaagcgctt
tcttgtatttaccgggttggacagcgctttggtatcgtctatattgttgaagtacttaga
ggcgcgaataatcagcgtatccgtgatatgcgacatgataatttaccggtttatggtatc
ggtaaagagcagagtcaggaacactggattagtgtattgcggcagcttattcatttaggc
tttatcagtcaaaacatcgccaactattctgcattacaattaacggaagctgcgcgtccg
atattgcgtggtgaagtttcactaaaactggctgttccacgaatacagaatctgaaaggg
cgtaatcagcaaagtaaatcatatagtggtaattatgatcgcaaactatttgccaagtta
cgtagattacggaaatctattgctgacgaagaaaatatcccgccttttgttgtgtttaat
gatgtcacgttgattgaaatggcagaacaatgcccggttacggctgatgaaatgttatta
atcaacggcgtggggcaacgtaaactggagcgttttggtaacgtctttatggccttaatt
tgtgaacatctagaggagcttgaatag
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