Candidatus Phytoplasma australiense: PA0664
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Entry
PA0664 CDS
T00752
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pal
Candidatus Phytoplasma australiense
Pathway
pal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PA0664 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pal03021
]
PA0664 (rpoC)
03400 DNA repair and recombination proteins [BR:
pal03400
]
PA0664 (rpoC)
Enzymes [BR:
pal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PA0664 (rpoC)
Transcription machinery [BR:
pal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PA0664 (rpoC)
DNA repair and recombination proteins [BR:
pal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PA0664 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Acyl-CoA_ox_N
DUF2201
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
CAM11998
UniProt:
B1VAM5
LinkDB
All DBs
Position
complement(661262..665326)
Genome browser
AA seq
1354 aa
AA seq
DB search
MNDNKLFRSIETLNFSFQTLEKLKLSGINNLEDFNTFSLEELRSLLQETFLEVLPILKQF
ALPRDLKKLNLNNDIIEKLTLLGIYDFEQLLKAELPVLTKTFQTDLASWRALNELFELYQ
HLPPEGLIVSNKKYGSRDYDYFKIRLASPEEIRQWSYGEVTSYETINYRTYKPEPGGLFC
QKIFGPVVDYRCACSKKQISTKSQFCNKCHVEFTETKVRRERMGHIELQAPVVHTWYFNS
SPSRLAVILNIKAKALEEIIYYISYVVIDPGKTDFKEKEIISKSQYSQNLDIFGPNGFVA
LTGAEAIRKLLENLDLEKTIKILRKNLSEVSKQKRGALIKRLEIMESLYQSDNNPEWMVM
DVIPVLPPGLRPMVPLDGGRFATTEINDLYRRILNRNNRLKKQMLQKAPSLIIQNEKRML
QEAVDCLFDGDRNVKKNVNNIEKNRPLKSLSEMLRGKQGRFRQNLLGKRVDYSGRSVIIV
GPDLKMHQCGIPREMAIILFKPFILKKLQETKGIDKKNANSIYEKMNEEVWNVLEEVVKE
HPVLLNRAPTLHRLGIQAFDPKLIDGKAIRLHPLVTPAFNADFDGDQMAVYIPLSLEAQA
EARLLMLASNNILDPKNGSPVVTPSQDMVLGNYYLTIETKKDLFAKDLKVSQEDAANHQQ
KHRNEGAFFADINEVKIAYQSKEIGLHTRIFIKPRSINLSFTEEQKEKYLMTTLGKLIFN
NILPPNFPYINEPTETNLYVKTPDRYFLNPGENPKSFLKKLPLPKPFNKKFLSMIIACFF
KQMKITETSKMLDKIKDLGFKYSTIAGITVSFADINIYSEKDKLLSKVEKRNNQIENWYK
QGFLTDAERRRLVINEWKTIRDQIQEGLMKEFPNDNHIFMMSESGARGSVSNFTQLAGMR
GLMNNPKGEIIEVPVKASFREGLKVSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVT
QDVVVIKEDCGSDHSFFVEAMMIDGKEIISLKNRILGRCASRDVLHPKTGDVIVSSNELI
NETIAQEIIDAKIKKVPIRSVLNCSCEYGICAKDYGFNLATNKPVEVGEAVGVIAAQSIG
EPGTQLTMRTFHTGGVASALDITQGLPRIEELFEARKPKGKALISEFKGKVKKINKINSP
HPEIIITTTNETGEKENLYVLDPNVDILVSKNDDVYPGQKLTSGSIDLKELLRVAGTIET
QKYILAEVQKVYRDQNVFISDKHIEIIIHQMFKQVFIIDEGDTKLLPGTEISINNFKKAN
LEMLKENKRLAVGRLVILGITRASLRSDSLLSAASFQETTKILIDAAIQGKSDYLYGLKE
NVIIGGLTPSGTGVLETKEFEYRTNSTPQNENKN
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataataaattatttagatcaatagagactctaaatttttcttttcaaactttg
gaaaaattaaaactttcaggaatcaataatttagaagattttaatactttttctttagaa
gaactaaggtctttattgcaagaaacttttttggaagttttgcctattttaaaacaattc
gccttaccacgtgatttaaaaaaattaaaccttaacaacgatattattgaaaaattgact
cttttaggtatttatgatttcgaacaacttttaaaagcagaattaccagttttaaccaaa
acttttcaaactgatctcgcttcttggcgcgcattaaacgaactttttgaattgtaccaa
catctacctccagaaggcttaattgtatctaataaaaaatacggtagtagagattatgat
tatttcaaaattcgtttagcatctcctgaagaaattcgtcaatggtcttatggggaggtt
acaagttacgaaacaattaattatcgtacttataaacctgaacctggcggcttattttgt
cagaaaatctttggtccagtagttgattatagatgtgcttgttccaaaaaacaaattagc
accaaaagccaattttgtaataaatgccatgtggaatttactgaaactaaagtcagaaga
gaaagaatgggacacatcgaattacaagcgccagttgtacatacttggtattttaattct
tctcctagtcgtttggccgttattttaaacattaaagctaaagctttagaagaaataatt
tattatatttcttatgttgtaattgaccctggtaaaacagattttaaagaaaaagaaatt
atttccaaaagtcaatatagtcaaaatttagatatttttggccctaatggttttgttgct
ttaactggtgctgaagcaattagaaaattattggaaaaccttgatttagaaaaaacaatt
aaaatccttagaaaaaacttatcagaagtttctaaacaaaaacgaggtgctttgattaaa
agattagaaattatggaatctttgtatcaatctgataataatcctgagtggatggtaatg
gacgttattcctgttttgccaccaggattaagacccatggtccctttagatggtggtcgt
ttcgccactactgaaattaatgatttatatcgtcgtattttaaatcgcaacaatcgttta
aaaaaacaaatgcttcaaaaagctccaagtttaattatccaaaatgaaaaaagaatgttg
caagaagcagttgattgtttgtttgatggtgatagaaacgttaagaaaaatgttaataat
atagaaaaaaaccgcccgcttaaatctttatcggaaatgttgcgtggaaaacaaggacgc
tttcgtcaaaatcttttaggaaaaagggttgattattctggccgttcagtaattattgta
ggtcctgaccttaaaatgcatcaatgtggtattcctcgagaaatggcaattatcttattc
aaaccttttattttgaaaaaattgcaagaaactaagggaattgacaaaaaaaatgccaat
tctatttatgaaaaaatgaatgaagaagtttggaacgttttagaagaagtagtcaaagaa
catcctgttcttcttaatcgcgcccctactttgcaccgtttagggattcaagcttttgat
cctaaattaatcgacggcaaagctattcgtttgcatcctttagtaacccctgcctttaat
gctgatttcgatggtgaccaaatggccgtttatatacctctttctttggaagctcaagcc
gaagctcgtttgttaatgcttgcttctaataatattttagaccctaaaaatggtagtccc
gttgttaccccttcgcaagatatggttttaggaaactattatttaactattgaaactaaa
aaagatcttttcgctaaagacctcaaagtttctcaagaagatgcagctaatcaccaacaa
aaacatcgcaatgagggagctttttttgctgatatcaacgaagtaaaaatcgcttatcaa
agcaaagaaataggacttcatacgcgtatttttatcaaaccgcgatcaattaacttatct
tttactgaggaacaaaaagaaaaatatttaatgactactttaggtaaattaatttttaat
aacattttacctcctaattttccttacattaatgaaccaactgaaactaatttatacgtt
aaaactcctgacagatattttttaaatccaggagaaaaccctaaatcatttttgaaaaaa
ttacccctcccaaaaccttttaataaaaagttcttatcgatgattattgcttgttttttt
aaacaaatgaaaattacagaaacttcgaaaatgttagataaaattaaagatttaggtttt
aaatattctactattgcaggaattactgtttcttttgctgatattaatatttattctgaa
aaagacaaattattatctaaagttgaaaaacgcaataatcaaattgaaaattggtataaa
caaggatttttaacagatgcagaacgtcgccgtttagttattaacgaatggaaaacaatc
cgcgaccaaattcaagaaggattaatgaaagaattcccaaatgacaaccatatttttatg
atgagcgaaagtggtgctcgtggtagtgtttctaactttactcaattagcagggatgagg
ggattgatgaataaccctaaaggggaaattattgaagttcccgtgaaagcctcttttaga
gaaggtttgaaagtttctgaatttttcatttctactcacggagcccgcaaaggttcaacc
gacactgctttaaaaactgctgaatcaggttatttaacacgtcgtttagttgatgttact
caagatgttgtggttattaaagaagattgcggaagtgatcatagtttttttgttgaagct
atgatgatcgacggcaaagaaattatttctttaaaaaaccgtattttgggtcgttgtgct
agtcgtgatgttttgcatcctaaaacaggtgatgttattgtatcttctaatgaattaatt
aacgagacaatcgcacaagaaatcattgatgcaaaaattaaaaaagttcctatccgtagt
gttttgaattgtagttgtgaatacggtatttgtgctaaagattatggttttaatttagcc
actaataaaccagttgaagtcggtgaagccgttggagttattgccgctcagtcaatcgga
gaaccaggaactcaattaactatgagaactttccatacgggtggtgttgcctcagcatta
gacattactcaaggacttccaaggattgaagaattatttgaagcaagaaagcccaaagga
aaagctttaattagtgaatttaaaggaaaagttaaaaaaatcaacaaaatcaattcacca
catccagaaattattattactacaactaacgaaaccggagaaaaagaaaatctttatgtt
ttagatcctaatgttgacattttagtgagcaaaaatgatgatgtttatccaggacaaaaa
ttaacttcaggatcaatcgatttaaaagaacttttaagagtcgcaggaacgattgaaaca
caaaaatatattttagcagaagtgcaaaaagtttatcgcgaccaaaacgtttttattagt
gataaacatattgaaatcattattcatcaaatgtttaaacaagtttttatcattgatgaa
ggtgacacaaaacttttaccaggtacagaaatttctattaataactttaaaaaagctaac
ttagaaatgttaaaagaaaataaacgtttagcggttggtagattagttattttaggaatc
actcgtgcttctttgagaagtgattctttactttctgctgcatctttccaagaaactaca
aaaattttaattgatgctgcaatccaagggaaatctgattatttatacggattaaaagaa
aacgtaattatcggcggtttaactccatctggtacaggcgttttagaaactaaagaattt
gaatatcgtacaaattcaactcctcaaaatgaaaataaaaattaa
DBGET
integrated database retrieval system
