Providencia alcalifaciens: CO695_02930
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Entry
CO695_02930 CDS
T05107
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pala
Providencia alcalifaciens
Pathway
pala03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pala00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CO695_02930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pala03021
]
CO695_02930 (rpoC)
03400 DNA repair and recombination proteins [BR:
pala03400
]
CO695_02930 (rpoC)
Enzymes [BR:
pala01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CO695_02930 (rpoC)
Transcription machinery [BR:
pala03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CO695_02930 (rpoC)
DNA repair and recombination proteins [BR:
pala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CO695_02930 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
ATG15303
UniProt:
A0AAW9V7B9
LinkDB
All DBs
Position
complement(646471..650694)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLIKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERAQILTEEQYLDALEEFGDEFDAKM
GAEAIQGLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGIYYMTRDCVNAKGEGMVLAGPKEAERVYRSG
HASLHARVKVRITEEVKDSEGNITINTGLVDTTVGRAILWMIVPKGLPYSLVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEAVINRDGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDILIPGTADILVPRNTLLHEKLCDLLEANSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNTGTLKL
VNAKFVTNSEGKLVITSRNTELRLIDEFGRTKESYKVPYGAHLTKGDGASVIGGETVANW
DPHTMPVVSEVSGIISFSDMLDGQTMTRQTDELTGLSSIVVLDTAERTSAGKDLRPALRV
IDANGNDVLIPNTDMPAQYFLPGKAIVQLDDGIAINAGDTLARIPQESVGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIADAGSSEFLEGEQVEYSRVKVSNRKLESEGKIPANFDRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQDRIRRRHLSEAVE
APQVSADEATANLAELLNAGFTSDNQK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttaattaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aagattgctctggcatcacctgatatgatccgttcatggtcattcggtgaagttaaaaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgatggtcttttctgtgcgcgt
attttcgggccagtaaaagactacgaatgtttgtgcggtaagtacaagcgtttaaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgag
cgtatgggtcatattgaactcgcatctccgactgcacatatttggttcttaaaatcacta
ccatcccgtatcggtttgctgctcgatatgccactgcgcgatatcgaacgcgttctgtac
tttgaatcttatgttgttgttgaaggcgggatgaccagccttgagcgcgcacagattctg
acagaagagcaatacttagatgcgttggaagagttcggtgacgaatttgacgcaaaaatg
ggtgcggaagcaatccaaggtctgctgaaaaacctcgatcttgagaacgagtgcgaaacg
ctgcgtgaagagttaaatgaaactaactcagaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgttagaagcgttcattcaatctggtaacaaaccagagtggatgatcttaaac
gttctgccagttctgccacctgatctgcgtccattagttccactggatggtggtcgtttc
gcaacatcagatctgaacgatctgtatcgtcgcgtaatcaaccgtaacaaccgtctgaaa
cgtcttctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgttgcaa
gaagcggttgatgcactgttagataacggtcgtcgtggtcgcgcaatcacaggttctaac
aaacgtcctctgaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactactcaggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcacttgagttattcaaaccattt
atctacggcaaattagaattacgtggtctggcaacaaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagcggttgtttgggatatcttggatgaagttatccgtgaacaccca
gttatgctgaaccgtgcaccaacacttcaccgtctgggtatccaagctttcgaaccaatt
ttgatcgaaggtaaagctatccaattgcacccactcgtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggcggtacacgttcctctgactctggaagctcagttagaagcg
cgtgcgttgatgatgtcaaccaacaacatcctgtcacctgcaagtggtgagcctatcatc
gttccttctcaggacgttgtattgggtatctactacatgactcgtgactgtgtaaacgcg
aaaggcgagggcatggtattagccggtcctaaagaagctgagcgtgtttaccgttcaggt
catgcttcactgcatgcccgtgttaaagtccgtatcactgaagaagtgaaggacagcgaa
ggtaacattacgattaacactggtttagttgataccacggttggtcgtgcaattttatgg
atgatcgtaccgaaaggtctgccttactctctggttaaccaagcgttaggtaagaaagca
atctccaaaatgctgaacacttgttaccgtgtactgggtctgaagccaaccgttattttt
gctgaccaaatcatgtataccggttttgcctatgcggcacgttctggtgcatcggttggt
atcgacgatatggttattccagagaaaaaagctggaatcatcgccgaagcagaagcggaa
gttgcagaaattcaggaacagttccagtctggtctggttacagcaggcgaacgttataac
aaagttatcgatatctgggcagcggcaaacgaacgtgttgctaaagcgatgatggaaaac
ttgtctactgaagcagtcatcaaccgtgacggtgaagaagaacaacaagtttctttcaac
agtatctttatgatggccgactccggtgctcgtggttctgctgcgcagattcgtcagcta
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacaccaatcacg
gcgaacttccgtgaaggtctgaacgttctccagtactttatttctacccacggtgctcgt
aagggtcttgcggataccgcattgaaaacagcgaactccggttacctgactcgtcgttta
gttgacgttgctcaagacttggtagtgactgaagatgactgtggtactcacgaaggtatc
ctgatgactccggttatcgagggtggcgacgttaaagaaccactgcgtgaacgtgtactt
ggacgtgtaacagctgaagatatcctgatcccaggtacagctgatattctggttccacgt
aatacactattacacgaaaaactgtgtgacctgttagaagctaactctgttgacagcgtg
aaagtacgttccgttgtaagttgtgaaactgacttcggtgtgtgtgctcactgttatggt
cgtgacctggctcgtggtcatatcatcaacaaaggtgaagctatcggtgttatcgcggca
caatcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagcatccaagttcgtaacacaggtactctgaaactg
gttaacgcgaaattcgtaaccaactcagaaggcaaactggttattacttcacgtaataca
gaattgcgtctgattgacgaattcggtcgtactaaagagagctataaagttccttacggt
gcacacttaaccaaaggtgatggcgcgtcagtgatcggcggtgaaaccgttgcgaactgg
gatccacacaccatgccagttgtcagtgaagtatctggtatcatcagcttctctgacatg
cttgatggccagactatgactcgtcaaactgatgagttaaccggtctgtcttcaatcgtg
gttctggatactgctgagcgtacaagtgctggtaaagacttacgtcctgcgctgcgtgtt
atcgatgcgaacggcaatgatgttctgatccctaacactgacatgccagctcagtacttc
ttaccgggtaaagcaattgttcagttagatgatggcattgcgatcaatgccggtgatact
ttagcgcgtattccacaagaatccgtcgggactaaagatatcacgggtggtctgccacgc
gttgctgacttgttcgaagctcgtcgtccgaaagagcctgcgattctggctgaaatcagc
ggtattatctcgtttggtaaagaaactaaaggtaaacgccgtctggttatcactccatta
gatggtagtgagccatacgaagagatgattcctaaatggcgtcagctcaacgtattcgaa
ggtgaaatcgttgaacgtggtgacgttgtttctgatggtccagagtctccacatgacatc
ctgcgtctgcgtggtgttcatgctgtgactcgttacatcactaacgaagttcaagaagtt
taccgcttacaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagtcaccatcgcggatgcaggaagctctgaattcctcgaaggtgagcaggtt
gagtactctcgtgttaaagtttctaaccgtaaactggaatctgaaggtaaaattccagct
aactttgatcgtgatctgttgggtattactaaggcatctctggcaacagaatcctttatc
tcagcggcatcattccaagaaactacacgcgtactgacagaagctgcggtagcaggtaaa
cgtgatgaactgcgcggtctgaaagaaaacgttattgttggacgtctgatccctgcgggt
actggttttgcgtatcaccaagatcgtattcgtcgtcgtcatctgagcgaagctgtggaa
gctccacaagttagcgcagacgaggcaacagcgaacttagctgaactgttaaatgcaggc
ttcactagcgacaatcagaaataa
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