Providencia alcalifaciens: CO695_06310
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Entry
CO695_06310 CDS
T05107
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pala
Providencia alcalifaciens
Pathway
pala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pala00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO695_06310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pala03019
]
CO695_06310
03009 Ribosome biogenesis [BR:
pala03009
]
CO695_06310
Enzymes [BR:
pala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CO695_06310
Messenger RNA biogenesis [BR:
pala03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO695_06310
Ribosome biogenesis [BR:
pala03009
]
Prokaryotic type
rRNA helicases
CO695_06310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ATG15922
LinkDB
All DBs
Position
1360357..1362330
Genome browser
AA seq
657 aa
AA seq
DB search
MTTETDMSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAA
FSLPLLHNIDADLKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPDADLLSQRRQAKFAEQIQQQLESSDLDQYRSLLAKMSPSEDVDME
TLAAALLKMAQGERALILPPDAPRRPRREFNDRDDRRGNDRRDRNSNGNGFDRAERGDRG
ARRERRDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPK
GMPADVLTHLSRARILNKPTQMQLIGDAQPFERRGGGERRGGPRREGGSEGGFGAGRRND
RGGDRDGRRGGGDREGFSGNRRGGNRDGANRGERGNSAPRQEGNNAAPRRRSSSHNA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgagaccgatatgtcttttgctgatctaggtttatcagcatctattttgaac
gcactaagcgacctgggatacgaaaaaccatctccaatccagcagcaatgtattccattg
ttattggatggtaacgatgtattaggtatggcacaaactggtagtggtaaaaccgctgca
ttcagcttgccattactgcacaacatcgacgctgatctaaaagcgccacaaattttagtt
cttgcaccaactcgtgagttggcagtacaagttgctgaagcaatgagcgatttctctaaa
catatgaaccgtgtaaacgtggttgccctgtacggcggtcaacgttatgacgttcagctt
cgcgcattacgccaaggaccacaagtggtcgtaggaactccgggtcgtctgcttgaccac
ctgaagcgcggtactttagacctttctaacctgaaaggcttagtattagacgaagctgat
gaaatgctgcgtatgggcttcattgaagatgttgaaaacatcatgagccaaatcccagca
gaacaccaaactgcgctgttctcggcaacaatgccagaaccaatccgtcgtattactcgt
cgctttatgaaagatcctaaagagatccgtattcaggcgagcattactacccgtccagac
atcgctcaaagctactggactgtttacggtatgcgtaaaaatgaagcgctggtgcgtttc
ttagaagctgaagatttcgatgcagcgattattttcgttcgtacgaaaaacgcaacgtta
gaagttgcagaaactcttgagcgtaatggctacaacagtgcggcactgaatggtgacatg
aaccaagcactgcgtgagcaaacattagagcgtttaaaagacggtcgtttagatatcctg
atcgcaactgacgttgcagcacgtggtctggatgttgagcgtatcagcttagtcgttaac
tacgacatcccaatggatgcagaatcctacgtccaccgtatcggtcgtactggccgtgca
ggtcgtgcgggtcgcgcattactgtttgttgaaaaccgtgagcgtcgcttgctgcgtaac
gttgaacgtacgatgaagctgactattcctgaagttgagctgccagatgcagatctgtta
agccaacgtcgtcaggctaaatttgctgaacaaattcaacagcaattagaaagcagcgac
ttagatcagtaccgttcactgttagcgaaaatgtctccatcggaagatgttgatatggaa
actttagcagcagcattactgaaaatggctcaaggcgaacgcgctctgatcctgccacca
gatgcaccgcgtcgtccacgtcgtgaattcaacgaccgtgatgaccgtcgtggtaatgac
cgtcgtgaccgtaacagcaacggtaatggttttgaccgtgcagaacgcggtgatcgtggc
gctcgtcgtgaacgtcgtgatgttggcgatatggaaatgtaccgtatcgaagtgggtcgt
gatgacggtgttgaagttcgtcatatcgttggtgcgattgctaacgaagcggatatcagc
agccgttacattggtaacatcaaattgtacggaactcactctacaattgaattaccaaaa
ggtatgccagctgacgtgttaactcacttaagccgtgcacgtatcctgaacaaaccaact
caaatgcaactgatcggtgatgctcagccatttgaacgccgtggtggcggtgagcgtcgt
ggtggcccacgtcgtgaaggtggtagcgaaggtggcttcggtgcaggtcgtcgcaatgac
cgtggtggcgatcgtgatggtcgtcgtggcggtggagaccgtgaaggtttcagcggcaac
cgtcgtggtggaaatcgtgatggtgctaaccgtggtgagcgtggtaactcagcgccacgc
caagagggtaacaatgcagcgccacgtcgtcgtagcagcagccataacgcataa
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