Providencia alcalifaciens: CO695_08230
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Entry
CO695_08230 CDS
T05107
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pala
Providencia alcalifaciens
Pathway
pala03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CO695_08230 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pala03400
]
CO695_08230 (recD)
Enzymes [BR:
pala01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CO695_08230 (recD)
DNA repair and recombination proteins [BR:
pala03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CO695_08230 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Helicase_RecD
Viral_helicase1
SH3_13
AAA_11
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
nSTAND3
PhoH
AAA_28
NACHT
NTPase_1
UvrD_C
MukB
SRP54
Motif
Other DBs
NCBI-ProteinID:
ATG16283
LinkDB
All DBs
Position
1784165..1786090
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AA seq
641 aa
AA seq
DB search
MKVLFNQAIEARLFTPLDVQFAYNIANEENPILLLVGALLSAETMSGHVCLSLDDIHPNS
LFMGRHPEFAAQLWQMIGEPDPSTIRAALLSSESVCEVGNNGVAPLILSGDFLYFQRMWQ
YEQCVAHFFSQTGSTDCDVVKTPSILSQLFPVSENIDWQKIAAAVAVTSRVSVISGGPGT
GKTTTVAKILALLIKLGHLPHRLRIELAAPTGKAAARLTESLGHALKQLPLNDEERTLLP
TQAKTLHRLLGAQPESQQFRYHRDNPLALDILIVDEASMVDLPMMSKLIEALPNSAKLIF
LGDKDQLASVEAGAVLGDICRFADKGYSYERAAQLESLTGCPLSDFTSNEGPVIRDSLCL
LRKSYRFSAESGIGQLAYAVNAGNVKRVDEILTQNFADIHNYISNNNPNSPSEHEAQSEL
ESGESYAQMLLDAVGFYQNYLLAVKVGEKPADILYKFNQYRLLAALREGAYGVSGLNDKL
EKLLHRQGLITKPYNLQHKHYVGRPIMISRNDSALGLFNGDIGIILFDEERQLRAYFQFP
DGTIRGIQPNRLPAHETAYVMTVHKSQGSEFAHTALVLPYVYSPVITRELVYTAMTRAKN
ELSLYGSKKVLRRAIETPTKRRSGLALQFEQLNSHHGIAKN
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgctatttaatcaagctattgaagcgcgtttattcacgcctcttgatgtacaa
tttgcctataatattgcaaatgaggaaaacccaatacttttgctggtgggagcacttctt
agcgcggaaaccatgtcagggcatgtctgtttatcactagatgatattcatcctaactcg
ttatttatgggaagacaccctgagtttgcagcgcagttgtggcaaatgataggggagccg
gatcctagcacgataagagccgcattgctgtcgagtgagtcagtatgtgaagttggaaat
aatggcgtagctcccttgatattgtccggtgattttctttattttcaacgcatgtggcaa
tatgagcagtgtgtcgcacactttttttcacagacagggtcaacagattgtgatgtagtt
aaaaccccgtcaattttgtcgcagttattcccagtctctgaaaatattgattggcaaaaa
attgctgctgcagttgctgtcacaagccgagtttcagtcatctccggtggacccggaaca
ggtaaaaccacgacagtagctaaaattttagcgttattgattaagttaggtcacctgcca
catcgtttacgcatcgaattagccgcgccaacaggtaaagccgccgcacgtttaacggaa
tctttagggcatgctctgaagcagttgccgctgaatgatgaagagcgaacgttgttaccc
acccaagccaaaacattacatcgcttgctaggcgctcagccagaaagccaacaatttcgt
tatcatcgtgataacccgttggcactggacatactgattgtggatgaagcatcgatggta
gacttaccgatgatgagcaaactcattgaagcgttgcctaactcggctaagttgatattt
cttggggataaggatcagctcgcatcagtcgaggcgggggctgttcttggggatatttgt
cgttttgccgataaaggttatagctatgagcgagctgcccagcttgaatcactgactgga
tgcccattaagtgattttacctccaatgaagggcctgttattcgcgatagtttatgttta
ctgagaaaaagctaccgtttttctgctgagtcagggatagggcaattagcctatgccgtc
aacgcaggaaatgtaaaacgggttgatgaaattcttacccagaatttcgcagacattcat
aattatatttctaacaataatccaaatagtccctctgaacatgaagcccaatctgagctc
gaaagtggagaaagttacgctcagatgttattagatgccgttggtttctatcaaaactat
ctgttggcggttaaagtcggtgaaaaacctgcagatattctttataaatttaaccaatac
cgtttgcttgctgcattaagagaaggggcttacggggtttctggtttaaatgacaagctt
gaaaaattacttcaccgccaaggcttaattacaaagccgtataatttacaacataaacac
tatgttggaagacctatcatgatcagccgtaatgatagtgctttggggctctttaatgga
gatattggtattattctatttgacgaagagcggcaactaagagcctattttcagttccct
gacggtactattcgtgggattcaaccgaatcgattaccagcccatgagacagcttatgtg
atgacggtacataaatcacaaggttcagagtttgctcataccgccttggttttaccctat
gtatattcgcctgtgattactcgtgaacttgtctatacggcaatgactcgagccaagaat
gaactttcgttgtatggcagtaaaaaagtgttgcgtcgcgcgatagaaacgccgactaaa
cgccgtagcggcttagcattacagtttgagcaattaaacagtcaccatgggattgctaag
aactag
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