Providencia alcalifaciens: CO695_15070
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Entry
CO695_15070 CDS
T05107
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pala
Providencia alcalifaciens
Brite
KEGG Orthology (KO) [BR:
pala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pala03016
]
CO695_15070
Enzymes [BR:
pala01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CO695_15070
Transfer RNA biogenesis [BR:
pala03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CO695_15070
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Speriolin_N
Motif
Other DBs
NCBI-ProteinID:
ATG17559
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All DBs
Position
complement(3213692..3214813)
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AA seq
373 aa
AA seq
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MNYRLVTTDSELAKVCQEASDAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLLM
TDFSPFKALLTNPNQLKFLHAGSEDLEVFMHDFGCVPEPMIDTQVLAAFLGYPISCGFAT
LVAEHLGIELDKSESRTDWLARPLSEKQCDYATADVLYLLPLAKILMEKVSEEGLLADAQ
DECQRIVARRQKTVKPEKAYLSITNAWQLRDEQLACLQLLAAWRLDQAKARDMAINFVIK
EENLWKVARYLPSSLGELDALGLSGQEIRCHGRRLLSIVEDAKKLDESQYPAPVANITEQ
SQYKSIFKEIKAVVKEIAENEKFNPELLASRRQINQLLAVHWGLKEKSCQPELLAGWRGR
LLEGPLTRLLSQA
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccgtttagtcacaacagatagcgaattagccaaagtttgccaagaggccagc
gatgcaccgtggttagcattagatactgagtttgttcgcactagaacctattaccctcaa
ctggggttattgcagttgtatgatggaaaacaggtttcattgattgatccgcttttaatg
acggactttagcccatttaaggcactgttaaccaacccaaaccaattaaaatttctacat
gcaggcagtgaagacttagaagtttttatgcatgattttggttgtgtgcctgagccaatg
atagatactcaagtgcttgccgcgttcttgggttatccaatttcttgtggttttgcgacg
ttagtagcagaacatttgggtatcgagctagataaaagcgaatcacgaacagattggctt
gctcgacctttaagtgagaaacagtgtgattatgcgactgcagatgtcctttatttgctg
ccactcgcgaaaattttgatggaaaaagtgtcagaagaaggtttattagcggacgcacaa
gatgaatgtcagcgtatcgttgcgcgtcgtcaaaaaacagtcaaaccagaaaaagcttat
ttaagcatcactaatgcatggcagctacgtgatgagcaacttgcctgtttgcaattactg
gcagcatggcgtcttgaccaagcgaaagcacgggatatggcaataaacttcgtcattaaa
gaagaaaatttatggaaggtcgctcgctacttaccaagttcattaggtgagctggacgca
ttaggtttatcagggcaggaaattcgttgtcacggtcggcgtttattaagtatcgttgag
gacgcgaaaaaactcgatgaaagccaatatcctgcacctgtggctaatatcacagagcaa
agccagtacaaaagtatctttaaagaaataaaagctgtggtgaaagagatcgctgagaat
gaaaaattcaaccctgaattactggcatctcgccgtcaaataaaccaattactagcagtg
cattggggattaaaagaaaaatcttgtcagcctgaactgcttgcaggttggcgtgggcga
ttattggaaggacccttaactcgattacttagccaagcgtaa
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