Paenibacillus albus: EJC50_05090
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Entry
EJC50_05090 CDS
T06567
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
palb
Paenibacillus albus
Pathway
palb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJC50_05090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palb03021
]
EJC50_05090
03019 Messenger RNA biogenesis [BR:
palb03019
]
EJC50_05090
Transcription machinery [BR:
palb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EJC50_05090
Messenger RNA biogenesis [BR:
palb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EJC50_05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
S1CSD-TOTE-2
AAA
OB_RNB
AAA_22
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AZN39113
UniProt:
A0A3S9A021
LinkDB
All DBs
Position
1086026..1087405
Genome browser
AA seq
459 aa
AA seq
DB search
MSELQIADLEVMKLTELYKLAKQHQIQGYGQLKKRELIFAILRAQAEQSGLMFMQGVLEI
LPEGFGFLRPINYLPSPEDIYISASQIRKFDLRTGDLVSGKCRAPKENERFFGLLQVNAV
NGESPEHAAERLHFPALTPLYPEKKLVLETAAPKLSTRIMDILAPVGLGQRGLIVAPPKA
GKTLLLKEIANSISTNHPEIELFVLLIDERPEEVTDMSRSVKGEVVASTFDELPENHIKV
AELVLERALRLVEAKKDVVILLDSITRLARAYNLVVPASGRTLSGGIDPAAFHRPKRFFG
SARNVEEGGSLTILATALVETGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPALDIRR
SGTRREEMLMSKEQLDKVWAIRKSMNDSMEFVDGFLKKLGETKTNEEFLMSLDTSAVAPA
PRSRPSSSGSGGTRTSSSGSSSSGSTTPRRPATRSTTVT
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacttcagatcgccgatcttgaagtgatgaagctcacagagctgtataagctg
gccaaacagcaccagattcaaggctatggccaattgaagaagagagaattgatttttgcg
attctgcgcgcgcaagctgagcagagcggacttatgtttatgcaaggcgtactcgaaatt
ttacccgaaggcttcggctttttgcgaccgatcaactatttgccaagtccggaggatatt
tatatttccgcttcgcaaatccgtaaattcgacctccgcacaggtgatttagtttcaggt
aaatgccgcgcccctaaagaaaacgaacgatttttcggattgcttcaagtaaatgccgtt
aatggagaaagccccgaacacgctgcagaacgtcttcattttccagctcttactccactc
tatcccgagaagaaattggtgctcgaaaccgccgctcctaagctttctacacgaattatg
gatattcttgcgccggtcggacttggccagcgtggtttgattgtggcaccgcctaaagct
ggtaagacattgcttcttaaagaaattgcgaacagtatttccaccaatcatcccgagatc
gaattgtttgtgctcctcattgatgagcgtccggaggaagtaacggatatgtcacgttcc
gtgaaaggtgaggttgtcgcgtcgacattcgacgaactgccggagaatcatatcaaagtt
gcggagttggtgcttgaacgtgcactgcgtcttgtagaagcgaagaaggacgttgttatc
ctgctcgatagcattacgcgtcttgctcgcgcatacaaccttgttgtgccggcgtccggc
cgtacgcttagcggcggtattgaccctgctgcgttccatcgtcctaaacgtttcttcggt
tcggcccgtaacgtagaggaaggcggcagcttgacaattttggcaacggctcttgtcgag
acaggctcgcgtatggatgatattatttatgaagaatttaaaggtacaggcaatatggag
cttcatcttgaccggaagctcgcggaacgccgtattttcccagcgctggatattcgccgc
tccggcacgcgccgcgaggagatgctcatgtcgaaggagcagcttgataaagtatgggcg
atccgcaagagcatgaatgattcgatggagtttgtggacggcttcctgaagaagcttgga
gagacgaagacgaacgaagagttcctgatgtcgctcgatacgtctgctgtggcgccggcg
ccaagaagcagaccgagctcaagcggtagcgggggcactcggacgagcagcagcggttca
tcaagcagtggctccactacacctagaagacctgcaacacgttcaacgaccgtgacatag
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