Paenibacillus albus: EJC50_05380
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Entry
EJC50_05380 CDS
T06567
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
palb
Paenibacillus albus
Pathway
palb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJC50_05380 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palb03019
]
EJC50_05380 (rnr)
03016 Transfer RNA biogenesis [BR:
palb03016
]
EJC50_05380 (rnr)
Enzymes [BR:
palb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EJC50_05380 (rnr)
Messenger RNA biogenesis [BR:
palb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJC50_05380 (rnr)
Transfer RNA biogenesis [BR:
palb03016
]
Prokaryotic type
tRNA degradation factors
EJC50_05380 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1_RRP5
OB_RNR_1st
OB_Dis3
RNase_II_C_S1
HFX_2341_N
Motif
Other DBs
NCBI-ProteinID:
AZN39157
UniProt:
A0A3S9A070
LinkDB
All DBs
Position
1137622..1140723
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AA seq
1033 aa
AA seq
DB search
MVTEQQLLAYMREAAYKPMTYQELDKQLGGGGNAESFRNFLVVLNELENEGKIVRNSSDR
YGLPERMNLVRGRIQAHAKGFAFLIPEDKTHGDVYIGAHDLTSAMNGDTVLVRVTSRSEN
GGRMEGEVIRIVERAVTQIVGTFQNHESYGFVLPDDKRINRDIFIAKDHFLGAVTGQKVV
VKILTYPEGRSAAEGEIVEVLGHKDDPGIDILSIIRKHQLPESFPVDVMAEAEAAPDSIT
EDEIVRQGRRDLRDKVIVTIDGEDAKDLDDAVNIERLENGNYVLGVHIADVSYYVQENSA
LDQEAYRRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFEAETLKRVRHDV
FTSVIRTKERMTYTNVRKILQGEDEEVTERYADLVDTFKLMEELATRLRGKRMKRGAIDF
DFVESKVIVDETGKAVDIVKRERSIAESIIEEFMLAANETVAEHFYWLKVPFLYRTHDNP
DQEKLLNFVQFAANFGYTIKGKGGSVIHPRALQTLLEDVRGSKEQTVISTVMLRSMKQAK
YDAESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVLENGGTLPEARQESLAARMPDI
AQQSSERERLAVEAERDTEKLKKCEYMLDKVGEEFDGIVSSVTGFGIFVELPSTVEGLIR
LSELSDDYYHFHEQHMLLIGERTSKTYRIGDEVRVRVERVNMDEHTIDFAMLKNLSADDA
DRAREYGLIGRGAGGRGGSRGGGGGRERGGAAATARSGGGRGERGGRGAGNGERGGSERA
GRGGARGGAAAPAAAAREASAGVGPRGRGKRRGGGAQSAGEAARGVSGAGAGSAAPAEQR
SGSGRRRKGRGGSGGESGAAGAIAPAQRAGDSRAWKPEDDYNIDRLLGNDRSGGTASSSG
GEGAASGGAPRKVRKDMWGLPITNAGSLKDYGEDPDQSWNPRSRGEGGRRGGGRGGRPGG
NSASRNGEGAGTGTRRKNKGGTGGGASTSKPAAAEGTNGNGGSNGGNNGNGLGQRKKKKK
GNSTAAFVRKNRV
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggtaacagagcagcagctgctagcttacatgcgtgaagcggcgtacaagccgatgacc
taccaagagcttgataagcagctgggcgggggaggcaatgcggagtcgttccgcaatttc
ctggtggtcttgaatgagctggagaatgaaggcaagattgtacggaattccagcgaccgc
tatggccttcctgaacgaatgaatttagtgcgcggacgcattcaagcgcatgcgaagggc
tttgctttcctcattccagaggacaaaacacatggcgatgtatatattggggcgcatgat
ctgacaagtgcgatgaacggagataccgtacttgtgcgcgtaacatcccgcagtgagaac
ggcggacgcatggaaggtgaagttatccgcatcgtggagagagcggtaacgcagatcgta
gggaccttccagaatcatgaatcctatggcttcgtactgccagatgataaacggattaat
cgggatatttttatagcgaaggatcattttctcggtgcggtaacggggcagaaggttgtc
gttaagattctgacctatccggagggacgctcggccgcagaaggcgagattgttgaggtg
cttggtcataaggatgatccaggcattgatattttgtcgattatccgcaagcatcagctg
ccggagagcttcccggttgatgtgatggctgaggctgaggcggctccggattccattacg
gaggacgagatcgtgcgccaagggcggcgcgatctgcgcgataaagtgatcgtcactatt
gacggcgaagacgcgaaagacctcgatgatgcggtcaacattgagcgtttagaaaatggc
aactatgtgcttggggtccatatcgcggacgtcagctattatgtgcaggagaactctgct
ctggatcaagaagcgtatcgccgcggttgcagcgtatacttggtcgatcgggtcattccg
atgctgccgcaccgattgtcgaacggaatctgctcgctcaatccgaaggttgaccgtctg
acgatgtcttgcgagatggagttcgaagcagagacgctgaagcgtgtccggcatgatgtg
tttacgagtgtgattcggacaaaagagcggatgacgtatacgaatgtgcgcaaaatcctg
caaggcgaagatgaggaagttaccgagcgttatgccgaccttgtcgatacgttcaagctt
atggaggagcttgctactcgtttgcgtggtaaacggatgaagcgcggcgcgattgacttc
gacttcgtagagtcgaaggttatcgtcgatgaaacgggcaaagcggttgatatcgtcaag
cgcgagcgttctatcgcggaatccatcattgaggaattcatgcttgcagccaacgagacg
gttgcggagcatttctattggctcaaggttccgttcctgtatcggacgcatgataatccg
gatcaggagaagctgctgaacttcgtgcagttcgcggccaacttcgggtatacgatcaaa
gggaaaggcggcagcgtcattcatccgcgagccctgcaaacgttgcttgaggatgtacgc
ggatcgaaggagcagacggttatctcgacggttatgctgcgttcgatgaagcaagcgaag
tacgacgccgagagccttggtcacttcgggcttgcagcggagttctactctcacttcacc
tcgccgattcggcgttatcccgatcttgtcattcaccgcgtgatgcgcgaggtacttgag
aacggcggaacactcccagaagcgcgtcaggagtcgctggcggcgcggatgccggatatt
gcgcagcagtcttcggagcgtgagcgccttgcagttgaggcggagcgggatacggagaag
ctgaagaaatgcgaatacatgctcgacaaggtcggcgaggaattcgacggcatcgtcagc
agtgtaacgggcttcggcatcttcgtcgagctgccgagcacggttgagggacttattcgt
ctgagcgagctatcggacgattattatcacttccacgagcagcacatgctgctcatcggc
gagcggacgtcgaagacgtaccgcatcggggatgaggttcgcgtgcgtgtggagcgggtg
aatatggatgagcatacgattgattttgcgatgctcaagaatttgagtgcggacgatgcg
gatcgtgcccgcgagtacggtttgatcggccgcggcgcaggcggccgtggcggttctcgc
ggcggcggcggtggacgcgagcgtggcggcgcagccgcaacggcgcgcagcggaggcggg
cgtggcgagcgcggtggtcgcggcgcaggcaatggcgagcgcggcggcagtgagcgcgcg
ggacgcggcggtgcgcgtggcggagccgcagcgcctgcggcggcagcgcgcgaagcgagc
gcgggcgtgggcccgcgtggccgcggcaagcggcgcggcggcggagcgcagagcgcgggc
gaagccgcgcggggcgtgagcggcgcaggcgcgggctcggcggcgcctgcggagcagcgc
agcggcagtggccgcaggcgcaagggccgcggcggcagcggcggcgagagcggcgcagcg
ggagcgatcgcgccggcgcagcgcgcgggcgattcacgcgcgtggaagccggaggatgat
tacaacatcgaccggctgctcggcaatgatcgcagcggcggtacggcctccagtagtggc
ggcgaaggtgctgctagtggtggtgctcctcgcaaggttcgcaaagatatgtggggattg
ccgattacgaatgccggctctttgaaggactacggtgaagatccagatcaatcctggaac
cctcgcagtcgtggtgaaggcggcagacgcggcggcggccgaggtggtcgtcccggcggc
aatagtgccagccgtaacggtgaaggcgccgggaccggtacgcgccgcaagaacaaaggc
ggcacaggcggcggcgcttcaacttcgaagcctgcagctgctgaaggcacaaacggcaac
ggcggtagcaatggcggcaacaatggtaatggccttggccagcgcaaaaagaagaaaaag
ggcaattccaccgcagcattcgtgcgtaagaatcgcgtgtaa
DBGET
integrated database retrieval system
