Pseudomonas alcaligenes: A0T30_01565
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Entry
A0T30_01565 CDS
T04318
Name
(GenBank) type IV secretion protein Rhs
Organism
palc
Pseudomonas alcaligenes
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
OCRE
Motif
Other DBs
NCBI-ProteinID:
AMR65117
LinkDB
All DBs
Position
328697..333559
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AA seq
1620 aa
AA seq
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MNFVIGSLIGQLNAKQPDVQVILKQFRNCLHDYREKSEAWYGGVLDAEQQFKVGDEVDTQ
DKDDKDPATLYATCPANGKLTLVHSFEAARFVPIGNTPTRIVAVEDGSFFGKNEIAKAIE
VTIGPSGIKEVPGCKPGQQYKVTFFPNPTRAQIDALYASYQGVIGQLEGWLNSEWSSQFL
PLWRAHNTASMSERALQQLEAAWKGLVKVIMGLWEDIKSLYDLVAHPRENYQKLRKFFTE
EQIKRIYNASKEGLETALLIASDEPLLWIYVAAIVAWVSMLPPQTCIEVLAELTGEVLLN
ILLGVVLTGGIGLAVRVGTKALTAAKNGGRVVKLIEDFTSMLMKFSQGHAKSHASSAKPL
LAHGSGGMQPTRKTTLKIDPPTPAQSAQPPSKPAGRRSGGKPSQAPSQVPPSAAAKTGTP
QIEPDATVYPRSKPQNATSLKQVEPVDDASAPAQTPNGKPADQADKTCTNNCPVSMVTGE
ELLTLTDGTLEGVLPFTWDRLYRTSAAELDCGLGFGWSHRLAQRLELDGDQLVWTDHENR
RTRFPVPSEQRPAITNRLSRAAIYLGQDPAELILAQAGEAPRFYHFRRDALGGYLIAISD
AYGNRLNLSRDLAGRLQRLSGAGRALLLRYEGSHIVAVDYQTQRPAENEEASWHSVQTLV
RYQYNAQGQLIAASNALGETEHYRYDDQHVILERRLAGGAAFYWEWQGQGKQARCVHHWA
NFGQMDARYVWDDQGSVTVVNADGSEETYVHDQNARLVSQVDPDGAETLRSYDDKGQLVA
EQNPLGAITEYHYDEAGRLESRIPAEGEAVHYSYFDGQVRSVRRGKAIWKYERNAQGDIT
EQIDPLGQSTRYRYDARGRLLEVQHPDGSQHLLVWNAQGELIEEQLPDSGIRRYRYDAFG
RLITRQDEHGALTQYQWDAVGRLLQVTLPGGTSRAYSYNAYGKVTSERDEQGRVTRYEYA
DGLHLVSHRINPDGSQLRYRYDNARLLLTAIENERGEHYRLDYHPNGLISQETGFDGRRT
AYRYDLAGHLIEKKEFAEDGSERVTAYQRDSAGRLLVKTLPDGEQIRYAYDGLGRLISVD
DGHWPLAYAYDLRDRLIEEHQGWATLRYEYDALGQLGHCRLPDGSHLDYRYRPGGELAGI
DLNGQPLTRHQFDKGRERYRRQGALLSEYDYDEQGRLQAHRVRSDHRQLLRRQYHYDAGG
NLAAIEDSRKGNRSFHYDPLDRLVAVRGDLPESFAHDPAGTLLAQNGAAPEGLANVKGNR
LLMQGDSHYDYDAFGNLIRERRGTGQKLVTEYRYDSQHRLIAASLPDGRQVQYRYDAFGR
RIAKMVDGQTTEFLWQGERLIAESGPAHYRSYIYEPGTFRPLALLKGEGEAAEPFYYQLD
HLGTPQELTSAGGQILWSVKYRAYGSLAKVEVAEIDNPLRFQGQYFDAETGLHYNRHRYY
NPGTGSFLTPDPIKLAGGLNNYQYVPNPTGWVDPLGLAKVKGNCPPTEQSSNDRDTKYEA
LPRLPDAGEGEYLYRGVYRGHPAEADAIDGVVTPGRVDGNVSPEDHNRGGHSADSPYTSW
TRSPDIARKWAREDGIILRVRIGAPKDGDSWSWQYSEDIWGEQEVLMKGPRKGDVEVYKP
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgtcatcggctccctgatcggccaactgaacgccaagcaacccgatgtccag
gtaatcctcaagcaattccgcaactgtctgcacgattatcgagagaagagcgaagcctgg
tacggcggcgttctcgacgccgagcagcagttcaaggtcggcgacgaagtagacacccag
gacaaggacgacaaggaccccgccaccctctatgccacctgcccggccaacggcaagctg
accctggtgcacagcttcgaggccgctcgcttcgtccccatcggcaataccccgacgcgc
atcgtagcggtcgaagacggcagtttcttcggcaagaacgagatcgccaaggccatcgaa
gtcaccatcggccccagcggaatcaaggaggtccctggctgcaagcctggtcagcaatac
aaggtgaccttctttcccaatcccacccgggcccagatcgacgcgctgtacgcttcttac
cagggcgtgattggccagctggaaggctggcttaacagcgaatggagcagccagtttttg
cccctgtggcgtgcccataacaccgccagcatgagtgagcgggcactgcagcaactggaa
gcggcctggaaggggctggtcaaggtgatcatggggctgtgggaagacatcaagtcgctc
tacgacctggtcgcccaccctcgcgagaactaccagaaactgcgcaagttctttaccgag
gagcagatcaagcgcatctacaacgcctccaaggaaggcctggaaaccgccctgctgatc
gccagcgacgaacccttgctgtggatctatgtcgccgcgatcgtggcctgggtcagcatg
ctgccgccgcaaacctgcatcgaggtactggcagagctgaccggtgaggtgctgctgaac
atcttgctcggcgtggtgctcaccggcggtatcggcctggccgtgcgcgtcggtaccaag
gcactgaccgccgccaagaacggcgggcgcgtggtcaagctgatcgaagacttcaccagc
atgctgatgaagttcagccagggtcacgcgaaatcgcatgccagctcggccaagcccctg
ctggcccacggcagcggcggcatgcaaccgacgcgcaaaaccacgttgaagatcgatcca
ccgactccggcgcaaagcgcacaacctccgtccaagccggccgggcgacgcagcgggggc
aagcccagccaagcgccaagccaggtgccccccagcgccgcagcaaagacgggcacgccg
cagatcgaaccggacgccaccgtctatccgcgcagcaagccgcagaatgccacctcgctc
aagcaggtcgagccagtggacgatgcctccgccccagcccagacacccaacggcaagccc
gcggaccaggccgacaagacctgcaccaacaactgcccggtatcgatggtcaccggcgag
gaactgctcaccctcaccgacggtactctggaaggtgtgctgcccttcacctgggaccgg
ctgtaccgtaccagcgcagcagaactggattgtggtctgggtttcggctggagccatcgc
ctggcccagcgcctggagctggacggcgaccaactggtgtggaccgaccacgagaatcgc
cgcacccgctttcccgttcccagtgaacagcgcccggccatcaccaatcgcctgtcccgc
gccgccatctacctcggccaggatcctgccgagctgatcctggcccaggccggcgaggcg
ccacgcttctaccacttccgacgcgatgctcttggcggctacctgatcgcgatcagcgat
gcctacggcaaccgcctcaacctcagtcgcgacctggccggacgcctgcagcgcctcagc
ggcgccggacgcgcgctgctgctgcgctacgaaggcagccatatcgtcgccgtggactac
cagacccagcgcccggcggagaacgaggaagccagctggcacagcgtgcagaccctggtc
cgctaccagtacaacgcgcagggccagctgatcgctgccagcaacgccctcggcgagacc
gagcactatcgctacgacgaccagcacgtgatcctcgaacgtcgtctggccggcggcgcg
gccttctactgggagtggcagggccaaggcaagcaggcacgttgcgtccaccactgggcc
aacttcgggcagatggacgcccgctatgtctgggacgaccagggtagcgtcaccgtcgtc
aacgccgatggtagcgaggagacctacgtccacgaccagaacgcccgcctggtgagccag
gtcgacccggatggcgccgagacgctacgcagctatgacgacaaaggccagctggtcgcc
gagcagaacccactgggcgccatcaccgaataccactacgacgaggccggacgcctggag
agccgcatcccggctgaaggcgaggcggttcactacagctatttcgatggacaagtacgc
agcgtgcgccgcggcaaggcgatctggaaatacgaacgcaacgcccagggcgatatcacc
gagcagatagacccactcggccagagcacccgctaccgctacgacgcccgcgggcgcctg
ctggaagtccagcatccggacggcagtcagcacctgctggtgtggaacgcccagggcgag
ctgatcgaggaacagctgccggactcgggtatccgccgctatcgttacgacgccttcggt
cgtctgatcacccgacaggatgagcatggcgcgctgacccagtaccagtgggacgccgtc
ggccggctgctgcaggtaaccctgcccggcggcaccagccgtgcctacagctacaacgcc
tatggcaaggtcaccagcgagcgtgacgagcagggccgcgtcacccgctacgagtatgcc
gacggtttgcatctggtcagccaccgcatcaaccccgacggcagccagctgcgctaccgc
tacgacaacgcccgcctgctgctcaccgctatcgagaacgagcgcggcgagcactaccgc
ctggactaccaccccaacggcctgatcagccaggagaccggtttcgacgggcgcaggacg
gcataccgctacgacctcgccggacacctgatcgagaagaaggaattcgccgaagacggc
agcgagcgggtcaccgcctaccagcgcgacagcgccgggcgcctgctggtcaagaccctg
cccgacggcgagcagatccgctacgcctacgatggtctggggcggctgatcagcgtcgac
gacggccactggccgctggcctacgcctacgacctgcgggatcgcctgatcgaggaacac
cagggctgggccaccctgcgctacgaatacgacgcgctcggccagttggggcactgccgc
ctgccggacggcagccacctggactaccgctaccgtccgggcggtgagctggcgggcata
gacctcaacggccagccgctgacccgccaccagttcgacaagggtcgcgagcgctaccgg
cgccagggcgccctgcttagcgagtacgactacgacgagcagggcaggctgcaggctcac
cgggtgcgcagcgaccatcgccagctgctgcggcgccagtatcactacgatgccggcggc
aacctcgccgccatcgaggactcgcgcaagggcaaccgcagtttccactacgacccgctg
gaccgcctggtagcagtacgcggtgacctgccggagagcttcgcccacgatccagccggc
accctgctggcgcagaacggcgctgcgccggaaggcctggccaacgtcaagggcaaccgc
ctgctgatgcagggtgacagccactacgactacgacgcctttggcaacctgatacgcgaa
cgacgcggcaccgggcagaaattggtcaccgaataccgctacgacagccagcaccgcctg
atcgccgccagcctgccggacggccgccaggtacagtaccgctatgacgccttcggccga
cgcatcgccaagatggtggatggccagaccaccgagttcctctggcagggcgagcgcctg
atcgccgaaagcggcccggcgcactatcgcagctatatctacgaacccggcaccttccgc
ccgctggcgctactaaagggtgagggagaagccgccgagcccttctactaccagctcgac
cacctgggcactccgcaggagctgaccagcgcaggcgggcagatcctctggtcggtgaaa
taccgcgcctatggcagcctggccaaggtggaagtcgcggaaatcgacaacccgctacgc
ttccaaggtcagtatttcgacgccgagacggggctgcattacaaccgccaccgttactac
aacccaggtacaggatcgttcctgaccccggatccgatcaagttggcgggggggctgaat
aactatcaatatgtgcccaacccaacggggtgggtggatccactgggcctggcgaaggtt
aagggaaattgtccacctacagaacagagctccaacgatagagatacaaagtacgaagcc
cttcctcgattacctgacgctggcgaaggtgaatacctatatagaggcgtctatcgaggg
catccagcagaggcggatgcaatagatggagttgtcacgcctggaagagtggacggcaac
gtcagccctgaagaccacaaccgaggtggtcactcagcagacagcccatacacttcatgg
acaagatcaccggatatagccagaaaatgggctagagaagatggcatcatattgagagtt
cgaattggcgcaccaaaagatggcgactcatggtcatggcaatactctgaagatatttgg
ggagagcaggaagtgctaatgaagggccccagaaaaggggatgtcgaggtatataaacca
tga
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integrated database retrieval system
