Aquipseudomonas alcaligenes: A0T30_08550
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Entry
A0T30_08550 CDS
T04318
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
palc
Aquipseudomonas alcaligenes
Brite
KEGG Orthology (KO) [BR:
palc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palc03009
]
A0T30_08550
Enzymes [BR:
palc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A0T30_08550
Ribosome biogenesis [BR:
palc03009
]
Prokaryotic type
rRNA helicases
A0T30_08550
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
DNA_pol3_chi
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMR66413
LinkDB
All DBs
Position
1880982..1882316
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AA seq
444 aa
AA seq
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MFSQFALHERLLKAVAELNFTEPTPVQQAAIPPALEGRDLRVTAQTGSGKTAAFLLPLLN
RLLGDASSKQRTDVRSLILLPTRELAQQILKEVERFSQYTFIKAGLVTGGEDFKEQAALL
RKQPDLLIATPGRLMEHLNAGSLKLNGVEVLVLDEADRMLDLGFAEDIERITHECANRQQ
TLLFSATGGGKVLREMIAKVLREPLHLKLNSVDQLSATTVQQIITADDATHKERLVQWLL
SNEPHRKAMIFCNTRAQVDRLYGHLVAMDYKAFVLHGEKDQKDRKLAIDRFRQGGSKVLV
ATDVAARGLDIDDLDLVINFDMPRSGDEYVHRIGRTGRAGASGLAISLICHNDWNLMSSI
ERYLKQRFERRVIKELKGSYQGPKNVKASGKAVGVKKKKTDKKDGAKKSATKTAPKRRAN
EPKAAPLVSQDGMAPLKRKKPAAE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtgttctcccaattcgccctgcatgaacgcctgctcaaggccgtcgccgagctgaacttc
accgagccgacgccggtgcagcaggcggccattccgccggcgctggaggggcgcgacctg
cgggtgaccgcgcagaccggcagcggcaagaccgcggccttcctgctgccgctgctcaac
cgcctgctcggcgatgccagctcgaagcagcgcaccgacgtgcgttcgctgatcctgctg
ccgacccgcgagctggcccagcagatcctcaaggaggtcgagcgcttctcccagtacacc
ttcatcaaggctggcctagtcaccggtggcgaggacttcaaggagcaggccgcgctgctg
cgcaagcagcccgacctgctgatcgccacccccggccggctgatggagcacctcaacgcc
ggcagcctcaagctcaatggtgtcgaggtgctggtgctggacgaggccgaccgcatgctt
gacctgggcttcgccgaggacatcgagcgcatcacccacgaatgcgccaaccgccagcag
accctgctgttctccgccaccggcggcggcaaggtactgcgcgagatgatcgccaaggtg
ctgcgcgagccgctgcatctgaagctcaacagcgtcgaccagctcagcgcgaccaccgtc
cagcagatcatcacggccgacgatgcgacgcacaaggagcgcctggtgcagtggctgctg
tccaacgagccgcaccgcaaggcgatgatcttctgcaacacccgcgcccaggtcgaccgt
ctctacggccacctggtggccatggactacaaggccttcgtgttgcacggcgagaaggac
cagaaggaccgcaagctggccatcgaccgcttccgccagggcggcagcaaggtactggtg
gccaccgacgtggccgcccgtggcttggatatcgacgacctcgacctggtgatcaacttc
gacatgccgcgctccggcgacgagtacgtgcaccgcatcggccgtaccggccgcgccggc
gccagcggcctggcgatctcgctgatttgccacaacgactggaacctgatgtcgagcatc
gagcgctacctcaagcagcgcttcgagcgccgcgtgatcaaggagctcaagggcagctac
caggggccgaagaacgtcaaggcgtccggcaaggcggtcggcgtgaagaagaaaaagacc
gacaagaaggacggggccaagaaatcggcgaccaagacggcacccaagcgccgcgccaac
gagcccaaggcggcgcctctggtcagccaggacggcatggccccgctcaagcgcaagaag
ccggcggcggagtga
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