Aquipseudomonas alcaligenes: A0T30_14450
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Entry
A0T30_14450 CDS
T04318
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
palc
Aquipseudomonas alcaligenes
Pathway
palc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0T30_14450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palc03400
]
A0T30_14450
Enzymes [BR:
palc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0T30_14450
DNA repair and recombination proteins [BR:
palc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0T30_14450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF7267
Motif
Other DBs
NCBI-ProteinID:
AMR67506
LinkDB
All DBs
Position
3148767..3152207
Genome browser
AA seq
1146 aa
AA seq
DB search
MSVLQLPKLPGAAGKQHWGNLPGAALSLAVAEAASAAKRFTLLLTADSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIATLYRLPEIKHGVLVVPIATALHRLAPT
RFLLGSGLLLDVGQKLDVEEMRARLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSETPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDYR
RCPIYQDLASGITPAGIEYYLPLFFEETGTLFDYLPGDTQVFSLPGIEQAAEQFWLDART
RYEDRRVDPERPLLPPADIFLPVEDCFARLKHWPRVVVSQEDVEVGVGRERFDARALPDL
AIQAKASEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPLEVANWHEFTAS
RERLAICIAPLDEGLLLDQIALIAESPLFGQRVMQRRRREKSRDGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALMYAEEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGHAFKDPAVDYATFSAGFPFEE
TPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNEAVAKLAEGKIDIVIGTHKLLQDDVRFK
DLGLCIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPA
RRLSVRTFVLEQQDSVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQTLVPEARVGIG
HGQMHERELERVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKGMTEDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPDDYLPDVH
TRLILYKRIASAADEDGLKELQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKVDAG
PQGGRIEFAADTCVDPLVLIKLIQGQPNRYKFEGATLFKFQVPMERPEERFNTLEALLER
LAPPSA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcaactgccgaaactgccgggcgccgccggcaaacagcactggggcaac
ctgcccggtgccgcgctgagcctggccgtggccgaagcggccagcgccgccaagcgcttc
accctgctgctgaccgccgatagccagagcgccgagcgcctgcaggaagaactggcgttc
ttcgcccccgacctgcccgtgctgcacttcccggactgggaaaccctgccctacgacgtc
ttttcgccgcaccaggacatcatttcccagcgtatcgccaccctctatcgcctgccggaa
atcaagcacggcgtgctggtggtgccgatcgccaccgccctgcaccgcctggcgccgacc
cgtttcctgctcggttccggcctgctgctggacgtcggccagaagctcgacgtcgaggag
atgcgcgcgcgcctggaagccgccggctaccgctgcgtggacaccgtctacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcgagacgccctac
cgcatcgacctgttcgacgacgaaatcgagacgctgcgcaccttcgacccggaaacccag
cgttcggtggacaaggtggagtcgatccgcctgctgccggcccgcgagtttccgctggag
aagaaggccgttaccgacttccgcgggcgcttccgcgaacgcttcgacgtcgactaccgc
cgctgcccgatctaccaggacctcgcctccggcatcaccccggccggcatcgagtactac
ctgccgctgttcttcgaggaaaccggcaccctgttcgactacctgccgggcgacacccag
gtgttctccctgccgggcatcgaacaggccgccgagcagttctggctggatgcgcgcacc
cgctacgaggaccgccgcgtcgaccccgagcgcccactgctgccaccggccgacatcttc
ctgccggtggaagactgcttcgcccgcctgaagcactggccgcgcgtggtggtgagccag
gaggacgtggaagtcggcgtcggccgcgagcgcttcgacgcccgcgccctgcccgacctg
gccatccaggccaaggccagcgagccgctggccgccctgcgtcgctttatcgaggagtat
ccgggccgcgtgctgttctgcgccgagtccgccggccgccgcgaggtgctgctggagctg
ctcgcgcggctcaagctcaagccactggaagtggccaactggcatgaattcaccgccagc
cgcgagcgcctggcgatctgcatcgcgccgctggacgaaggcctgctgctcgaccagatc
gccctgatcgccgaaagcccgctgttcggccaacgggtgatgcagcgccgccgccgcgag
aaatcgcgcgacggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggcgcg
ccggtggtgcatatcgaccacggcgtcggccgctacctgggcctggtgaccatggagttc
gacggccaggctgccgaattcctcgccctgatgtacgccgaggaagccaagctctatgtg
ccggtggccagcctgcacctgatcgcccgctacaccggcagcgacgacgccctggcgccg
ctgcatcgcctgggctcggaaacctggcagaaggccaagcgcaaggccgccgagcaggtg
cgcgatgtcgccgccgaactgctcgacatctacgcccgccgcgccgcgcgcgaaggccat
gcgttcaaggacccggccgtcgactacgccaccttcagcgccggcttccccttcgaggaa
accccggaccagcaggccgccatcgacgcggtgcgcgccgacatgctggccggcaagccg
atggatcgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtggccatgcgcgcg
gcctttatcgccgtgcacagcggcaagcaggtggcggtgctggtgcctaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggcctgtaacggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcaacgaagcggtggccaagctggccgaa
ggcaagatcgacatcgttatcggcacccacaagctgctgcaggacgatgtgcgcttcaag
gacctcggcctgtgcatcatcgacgaggagcaccgcttcggcgtacgccagaaggagcag
ctcaaggccctgcgtagcgaagtcgacattctcaccctgacggcaacgccgattccgaga
acgctgaatatggcggtatcgggcatgcgcgacctgtcgatcatcgccaccccgccggcc
cgccgcctgtcggtgcgcaccttcgtcctggagcagcaggattcggtgatcaaggaagcg
ctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgacgtgaagacc
atcgagaagtgcgccgccgacctgcagaccctggtgcccgaggcacgcgtcggcatcggc
cacgggcagatgcacgagcgcgagctggaacgggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagcgccaac
accatcctcatcgagcgcgccgacaagttcggcctggcccagctgcaccagctgcgcggc
cgcgtcgggcgtagccaccaccaggcctacgcctacctgctgacgccgccgcgcaagggc
atgaccgaggacgcgcagaagcgcctggaggccatcgccaacgcccaggacctgggcgcc
ggtttcgtcctggccacccacgacctggagatccgcggcgccggcgagctgctcggcgac
ggccagagcgggcagattcaggcagtcggcttcaccctctacatggaaatgctggagcgg
gccgtcaaagccatccgcaagggcgagcagcccaacctggagcaaccgctgggcggtggt
ccggaggtcaacctgcgggtgccggcgctgattcccgacgactacctgccggacgtgcat
acccgcctgattctctacaagcgcatcgcctcggccgccgacgaggacggcctgaaagag
ctgcaggtggagatgatcgaccgcttcggcctgctgccggagccgaccaagaacctgatg
cgcctgaccctgctcaagctgcaggcggagaaactcggcatcaagaaagtcgacgccggc
ccccagggcgggcgtatcgagtttgccgccgacacctgcgtcgacccgctggtgctgatc
aagctgatccagggccaaccgaaccgctacaagttcgaaggcgccaccctgttcaaattc
caggtgccgatggagcgcccggaagaacgtttcaataccctggaggcgctgctggagcgc
ctcgccccgccatccgcctga
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