Aquipseudomonas alcaligenes: A0T30_19815
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Entry
A0T30_19815 CDS
T04318
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palc
Aquipseudomonas alcaligenes
Pathway
palc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A0T30_19815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palc03021
]
A0T30_19815
03400 DNA repair and recombination proteins [BR:
palc03400
]
A0T30_19815
Enzymes [BR:
palc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A0T30_19815
Transcription machinery [BR:
palc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A0T30_19815
DNA repair and recombination proteins [BR:
palc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A0T30_19815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
AMR68514
UniProt:
A0AA42N1E2
LinkDB
All DBs
Position
complement(4286646..4290845)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLNAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNHPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHAKVKVRINETVKQKDGSLVKNTRIVDTTVGRALLFQIVPAGLSYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVPKPGSDEIIVPAGTLVDEKWVEFIERNSIDEVVVRSPITCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERADGALVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPALKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLGENEQLAAEDKFIAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPQR
VSASEVEAALTEALNSSSN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgctgaaaaaccagggtcaggttgaagagttcgatgcgatc
cgtatcggtctggcttcgcctgagatgatccgttcctggtctttcggtgaagtgaaaaaa
ccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggtctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggtaagtacaagcgtctcaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtggccctggccaaggtccgtcgtgag
cgcatggcgcacatcgaactggcctcgccggtcgcccacatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgacccgggcatgactaccctggagaagggccagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgacgcgcgcatg
ggcgccgaggccgtgcgcgagctgctcaacgccatcgacctggatcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttcaaggactccggcaaccacccggagtggatggtcctgacc
gttctgccggtactgccgccggacctgcgtccgctggttccgctggatggtggccgcttc
gcgacttccgatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctggccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctgggtaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctcgaagcccgcggcatggccaccaccatcaaggcggccaagaagatg
gtcgagcgcgaactgcccgaggtctgggacgttctcgccgaagtcatccgcgaacatccc
gtgctgctcaaccgcgcaccgaccctgcaccgtctgggcatccaggcgttcgagccggtt
ctgatcgaaggtaaagccatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgttccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacgtgctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtatttgccgacctgcaggaagtcgaccgcgtgttccgcgccggc
gaagcttccctgcacgccaaggtcaaggtgcgcatcaacgagaccgtcaagcagaaggac
ggcagcctggtcaagaacactcgcatcgtcgacaccaccgtcggccgtgccctgctgttc
cagatcgtgccggccggcctgtcctatgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcactgtgggtctgaaggacaccgtgatcttc
gccgaccagctgatgtacaccggtttcgcctactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggatgagaaggcgcgcatcatcgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgaccaggagtccttcaac
tccatgtacatgatggcggactccggtgctcgtggtagcgccgcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagaccccgatcacc
gcgaacttccgtgaaggcctgaacgtactgcagtacttcatctccactcacggtgcgcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgacccgtcgtctg
gtcgacgtggcccaggacctggtcgtgaccgaagtcgactgcggcaccgaacacggtctg
ctgatgactccgcacatcgaaggcggcgacgtggttgagccgctcggtgagcgcgtgctc
ggccgtgtcatcgccaaggacgtgccgaagccgggcagcgatgaaatcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagcgcaacagcatcgacgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgctacggcatctgtgccaagtgctacggc
cgcgatctggcccgtggtcaccaggtcaacatcggtgaagcggtcggcgttatcgccgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcc
gccagccgtacctcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgtctg
cacaacctgaagcatgtcgagcgtgccgacggcgccctggtcgcggtatcgcgctccggt
gagctggccatcgccgacgaattcggtcgcgagcgcgagcgctacaagctgccgtacggt
gccgtgatttcggtgaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtaccgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacatcgaa
gtcctcgatccgaaagatcgtccggccgctggtaaggacatccgtccggcgctgaagatg
gttgacgccaatggcaaggaactgctgctgccgggtaccgacgtaccggcccagtacttc
ctgccggccaacgccctggtcggcgtggctgacggtgcgcagatcggtgtcggtgacgtc
atcgcccgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacttgttcgaagcccgtcgtccgaaagaggcttcgatcctggcggaaatcagc
ggcaccatcagcttcggcaaggagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagtgatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtg
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatcagcgagtccggcgactccagcttcatcaagggcgaccagatg
gaactgacccacgtgctgggcgagaacgagcagctggcggccgaagacaagttcatcgcc
aagtacgagcgcgttctgctgggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tccgcggcctccttccaggagaccacccgcgtactgaccgaagcggctgtgaccggcaag
cgcgattacctgcgcggcctgaaggagaacgtggtcgtgggtcgcctgatcccggccggt
accggtctggcgtatcacagcgagcgcaagcgcaagcgtgatgccgacaagccgcagcgc
gtgagtgccagtgaggtcgaggccgcactgaccgaagcgctgaactccagcagcaactga
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