Pseudomonas alloputida: LU682_017495
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Entry
LU682_017495 CDS
T09345
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pald
Pseudomonas alloputida
Pathway
pald02025
Biofilm formation - Pseudomonas aeruginosa
pald03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
LU682_017495 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
LU682_017495 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pald02044
]
LU682_017495 (tssM)
Secretion system [BR:
pald02044
]
Type VI secretion system
Imp/Vas secretion system core components
LU682_017495 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
Motif
Other DBs
NCBI-ProteinID:
WJR14984
LinkDB
All DBs
Position
complement(3802249..3805869)
Genome browser
AA seq
1206 aa
AA seq
DB search
MNQIWTQLKRWGWPWVTRIGLALPLLLGLGALLMLVAIWWLGPQWTWREQQPLASVAHRS
VASLVLVLVPLLCWLGVLRTRFRRLQAERRQALAAEQDVALPFVQAQERALSQGLERYLD
NAGGRRALYRLPWYLVLGDEQSGKSSFIDRTDQRFTLTRIDQAQARGRQTQAMAYPVGWW
VSDDAVIIDPPGVFISQKPPVGSAANAPSEASAPPGIQARLWEHLLGWLQRKRSQRALNG
VLLVVDLPALLHGRPEQRVALAHGLRTRLYEVSSQLGARLPLYVVLTKFDLLDGFDQFYS
QLPAAKRKSLLGFTFKLDAVDAFDAWLDEYDEHYGRLLTQLQEQVIDRLDVLGKTAPCGR
LFSLHAQLIGLRPILQAFLRETLASDRFTTPPLVRGVYWSSVVQQGDMRNAFVREAAQPY
TTKLPLREGKAQGKALVYFIQQAFRRVIYQEAGLAGDNVRVARSKRHLLWVGSGVGILAF
SIAVASWQRYADINGAKAASVLAKSQEYSGHEVDMRLDPTGRNLLAPLDQIRDAVAVFGD
YRAAWPVVADFGLYQGRNIGPLVDEAYLSLLSKRFLPALASGVIDAMNAAPPGSEQQMAA
LRVYRMIEDRNSRRPEWVEDWMARQWQRAFPGQGQLQRDLMQHLKYALAYADTDLPQYRQ
RVSEVQQALRKLPLPQRVYAGLKQQSYQQLHAGLDLRHQVGPAFDVVYQPSSGARQGDED
VRLAAMLTAKGFREYFEPHSQRFAEMAMVDQWALGERSQLDYSDVDRDALTERLYNLYSA
DYIDSWRRALTAFTVADFRDLDHGVAILEQLTGPAAPLQRLLDTVRDNTSLAPPAAVEAS
GELSTLRVATGKPEQQQALAIQRAFAGLGAMLQATGEKPSYYDETLGAVAAVLDYAKAVQ
DSPDRGKAALQAVHQRFAMTGQDPIGTLQRIATGLPEPISHQVRKLADQTAQVLNVEALR
ELERRWDADVYSFFQQRLAGRYPFVVKAPDASLDDFEAFFGPKGRLQQFNDRYLKVFLKD
NLEALQSAQHGQSLIRADVIEQLELAERIRETFFDQRGKLSVQFSIEPLGLSANQRTSLL
DLDGQLIAYTHGPSHITGIVWPNTLGQQVRSNLTLLRQNGNSSSLEYRGPWSMFRLLSRG
ALNGRTATSVDLSFRTGDGVMRYRLNAEKAFNPITQQPFKGFRLPRGLLQQPASVVQAVL
PDGQRL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaatatggacgcaactcaaacgttggggctggccgtgggtaacgcgcattggc
ctggcgctgccgctgctgctcgggcttggcgccttgctgatgctggtcgccatctggtgg
cttggcccgcaatggacgtggcgtgagcagcagccgctggcaagtgtggctcatcgcagc
gtggcaagcctggtgctggtgctggtgccgcttctgtgctggcttggggtgctgcgcacg
cgctttcgccgcctgcaagcggagcgccgccaggcactggccgccgaacaggatgtcgcg
ctaccattcgtgcaggcgcaagagcgggccttgagccaggggcttgagcggtacctcgac
aatgccggtgggcgacgcgcgttgtaccggctgccctggtacctggtgttgggcgacgaa
cagtccggtaaaagcagcttcatcgaccgcaccgatcagcgctttaccctgacgcgtatc
gaccaggcccaggcacggggccgacagactcaagcaatggcctacccggtaggctggtgg
gtcagcgacgatgccgtgatcatcgacccgcccggtgttttcatcagtcaaaaaccaccg
gtgggctcggcggccaacgccccctccgaagcctccgcgccgcccggcatccaggcccgg
ttatgggagcacctgttgggctggctgcagcgtaagcgaagccagcgggcgctcaatgga
gtgttgctggtggtcgacctgccggcgttgctgcatggcaggcccgagcagcgcgtcgcg
ctggcccatgggttgcgcacacgcctgtacgaagtgagcagtcagttgggggcgcgcctg
ccgctgtacgtggtactgaccaaattcgatctgctggacggcttcgaccagttctacagc
cagcttccggccgccaagcgtaaaagcctgttggggttcaccttcaagctggatgcggtt
gacgcgttcgacgcctggctggatgagtatgacgagcactacgggcggcttctcacccaa
ttgcaggagcaggtcatcgaccggctggatgtactgggcaagacagcgccgtgcgggcgc
ctgttctcactgcatgcacagttgatcgggttgcgccccatactgcaggcattcctgcgc
gaaaccttggcgagtgaccggttcaccacgccacccttggtacgtggtgtgtactggtcg
tcagtggtacagcaaggcgacatgcgcaatgcctttgtccgagaagcggctcagccctac
acgacgaagctgcccctgcgtgaaggtaaggcacaggggaaggcgttggtctatttcatc
cagcaagcattcaggcgggttatctatcaggaagccgggctggcgggtgacaatgttcgg
gttgcgcgcagcaagcgccacttgctgtgggtgggctctggtgtaggcatcctggcgttc
agtatcgccgttgccagctggcagcgttacgccgacatcaatggcgccaaggctgccagt
gtgctcgccaaaagccaggagtacagcggtcacgaagtcgatatgcgtcttgatccgacc
gggcgcaacctgctggcgccactggaccagattcgcgatgcggtcgcggtgtttggcgac
tatcgtgcggcctggccggtggttgccgattttggcttgtatcaagggcgcaacattggt
cccttggttgatgaggcgtacctcagcttgttgtctaaacgtttcttgccggccttggcc
agtggtgtgatcgatgccatgaacgcagcaccacctggcagcgagcaacaaatggccgcg
ctcagggtttaccggatgatcgaggaccgcaacagccgccggcccgaatgggtcgaggac
tggatggcccgtcagtggcaacgggcctttcctggccaggggcagttgcagcgtgacctc
atgcagcacctgaaatacgccttggcctatgccgataccgatttgccgcagtaccgccag
cgggtcagcgaagtgcagcaggcgctgcgcaaattgccgttgccacagcgggtctatgca
gggctgaaacaacaatcgtaccagcagttgcacgccgggctggacctgcgccaccaggta
gggcctgcgttcgatgtggtgtaccagccgtcttccggggccaggcaaggggatgaggat
gtacggctggccgccatgctcaccgccaaaggcttcagggaatacttcgagccgcacagc
caacgcttcgctgaaatggcgatggttgatcaatgggcattgggggagcgcagtcaactc
gactattcggacgtcgaccgcgatgcgctgaccgagcggctgtataacctctacagcgcc
gattacattgacagctggcggcgcgccctgaccgcttttacggtggctgacttccgtgat
ctggaccatggtgtcgcgatcctggagcagttgaccggccccgcagcaccattgcaacgg
ctgctggatacggtcagggataacacctcgcttgcgcctccagcagctgttgaagcatcg
ggtgagctgagtacgctgcgcgtagcaaccggaaaacccgagcaacagcaagcgttggcc
atccagcgggcgtttgcaggccttggcgccatgctgcaggcgacaggagaaaagccgagc
tactacgatgaaacccttggcgctgttgcggccgtgctggactacgccaaggccgtacag
gacagcccggaccgcggcaaggctgctttgcaggccgtgcatcagcgctttgcgatgaca
gggcaggacccgataggcaccctccaacgtattgccacaggtttaccggagcctatcagc
caccaggtcagaaagctcgccgaccagactgcccaggtgctgaacgttgaagcactgcgc
gaactggagcgacgttgggatgctgacgtgtacagttttttccagcaacgcctggcaggc
cgctacccctttgtggtgaaggcacccgatgcttctttggatgacttcgaggcgttcttc
gggccgaaagggcgcctgcagcagtttaatgatcggtatctcaaggttttcctgaaggac
aaccttgaggccttgcagtccgctcagcacgggcaatccctgattcgtgccgacgtgatc
gagcagctcgagctggcggagcgcatccgcgaaaccttcttcgatcagcgtggcaagcta
agtgtgcagttcagcatcgagcccttggggctcagtgcaaaccagcgtaccagcctgctg
gacctggatggccagttgattgcctacacccatgggccaagccatatcacgggtattgtc
tggcccaataccttggggcagcaggtccgcagcaatctcaccttgctaaggcaaaatggc
aacagcagcagcctggagtaccgtggcccgtggtcgatgttccgcttgctcagccgcggt
gcgctcaatggccggacggcgaccagcgtggacctgagcttcaggaccggagatggcgtg
atgcgctatcggcttaacgctgaaaaagccttcaatcccattacccagcaacctttcaaa
ggcttccgcttgccccgaggcttgttgcaacagccagccagtgtggtgcaggcggtgcta
ccggatgggcagcgactatga
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