Pseudomonas alloputida: LU682_022890
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Entry
LU682_022890 CDS
T09345
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pald
Pseudomonas alloputida
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pald03009
]
LU682_022890 (rlmD)
Enzymes [BR:
pald01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LU682_022890 (rlmD)
Ribosome biogenesis [BR:
pald03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LU682_022890 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
PCMT
Methyltransf_4
Ubie_methyltran
TPMT
PrmA
DREV
Motif
Other DBs
NCBI-ProteinID:
WJR15975
LinkDB
All DBs
Position
complement(4937653..4939011)
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AA seq
452 aa
AA seq
DB search
MSKKKSNSGLRFQPAGGNRTPQVPVGKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGE
AVEARVLNARGKVVEARLERLLQAAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTL
AEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDD
CAVLVQPLQSILRHLPTVLRSLSKPQALGHVELFSGTAEAVLVRHVAPLPAEDQARLQAF
CEQANAQLWLQGEGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALA
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQ
ADLSQPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQV
LVGQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaaaaaaagcaacagcggcctgcgcttccagccggccggcggcaatcgcacc
ccgcaggtcccagtgggcaagaagcagcgcctggacatcgagcgcctggccggtgacggc
cgtggcatcgccttcctcgacgggcgtacctggttcgtcagcggtgccttggccggtgag
gccgtggaggcgcgggtgctcaacgcccgtggcaaagtggtcgaggcccgcctggagcgg
ttgctgcaggccgcgcccgagcgccgtgaggcgccatgtcgctactacgaccgctgcggt
ggctgcaacctgcagcacctgccgcacgaagcgcaactggcgctgaagcagcgcacactc
gccgagcagttgcagcgggtggccggcgtgcaacccgaggcgtgggctgcccccctgagc
gggccggaattcggctaccggcgccgggcccgtgtcgccgtgcgctgggacgtcaaggcg
cgtcagctggaggtgggcttccgcgccgaagccagccaggacatcatagccatcgacgat
tgcgcagtgctggtacaacccttgcagtccattttgcggcacttgccgaccgtgctgcgt
tcgttgagcaagccgcaggcgctgggccatgtagagcttttcagtggcaccgccgaggcg
gttctggtgcgccacgtcgcgccattgccggctgaggaccaggccaggttgcaagcgttc
tgcgagcaggccaacgcccagctgtggctgcaaggcgaaggtgagccggcgcccgtggac
ccagcggcgcagttgggctttgccctggccccctggcagctggagctggcctggcgcccg
ggcgatttcgtgcaggtgaatgcccaggtcaatacggcgatgatcgagcaggctttggcc
tggctcgctccacaagccgacgagcgtgtgctggacttgttctgcggtctgggcaacttt
gccctgccgctggcccgccaggcgcgtgaggtggtggcagtggaaggtgtacaggccatg
gtcgatcgggccgcggccaatgcccggaacaacaatgtgcataacgcacggttttttcag
gccgatttatcgcagcctttggcaggcaccggatgggccgccgagggcttttctgcggta
ctcttggatccaccgcgcgacggtgctttcgaggtggtgcaaggcatcgcccgcctcaag
gccagaaggctggtctacgtatcgtgcaacccggccacgctggcgagagacgcccaagtg
ctggtcggccaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcgcatgtcgaggccatggcgttattcgaagcgggctag
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