Pseudomonas alloputida: LU682_023125
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Entry
LU682_023125 CDS
T09345
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03030
DNA replication
pald03430
Mismatch repair
pald03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LU682_023125 (dnaE)
03430 Mismatch repair
LU682_023125 (dnaE)
03440 Homologous recombination
LU682_023125 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pald03032
]
LU682_023125 (dnaE)
03400 DNA repair and recombination proteins [BR:
pald03400
]
LU682_023125 (dnaE)
Enzymes [BR:
pald01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LU682_023125 (dnaE)
DNA replication proteins [BR:
pald03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LU682_023125 (dnaE)
DNA repair and recombination proteins [BR:
pald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LU682_023125 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
WJR16020
LinkDB
All DBs
Position
complement(4983010..4986534)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaaaccgctggccaaggcgctgaccgggatgaacatgccggcggtcgcgatc
accgatcagagcaacatgtgctcgctggtgaagttctacaagactgccatgggcgccggc
atcaaaccgatctgcggtgccgacctgtggctggccggtgccgacccggaagccccgctg
tcgcgcatctgcttcctggccatggaccccaagggctatcgcaacctcaccgaactgatc
tcgcgcggctggaccgatggccagcgcaatggcctggtcatcctccagcgtgaatggatc
gccccggccagcgagggcctgattgccctgtccgcgggcaaggaaggcgacattggcatg
gcgctgctggcggggcggcaagacgaagccgaagcgcttcttcaagactggatgggcatg
ttccccgagcgcttctacgttgaagtgcagcgcaccaatcgggcacgcgacgaagaatac
gtgcacgcggcggtggcattggccgacaagcttggcgccccgctggtggctaccaacgac
gtacgtttcatcaagcaggcggacttcgacgcccacgagacccgcgtatgcattggcgag
ggatggacccttgacgacccgcgccgtccgcgttgctacagcgaccagcagtacctgaag
tcggccgaggaaatggccgagctcttcagcgacctgcccgacgccatcgccaacaccgtc
gagattgccaagcgctgcaacatccaggtgcaactgggcaagtacttcctgcctgacttc
cccacgcccaacggcatgggcatcgacgactacctgcggcatgtggcccacgaaggcctg
gaagagcgcctggccgtgctgtggccgaaagagaccacgcccaattatgaagaaaagcgt
caggtttacctggaccgcctgaagttcgagctggacatcatcatccagatgggcttcccc
ggttacttcctgattgttatggacttcatcaaatgggccaagaacaacgacgtaccggtg
ggcccgggtcgtggttcgggtgccggctcgctggtggcctatgtcctgaagatcaccgat
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtgtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgggtgatcgactacgtg
gctgaggcctacggccgtaacgcggtgagccagatcatcaccttcggtaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcaaggcaaatcctatggcctggccgaccgc
ctgtcgaagatgatccccttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgtgacttcctcaagggcgacgaagacgcccgtgaaatctgggacatggcc
ctgaagctggagggtgtgacccggggtaccggcaagcacgccggtggtgtggttatcgca
ccgaccaagctcaccgacttttcgccgatcgcctgtgatgaagagggtggtggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcgtaccttgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgacctcaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgctgcagaaggccgaaaccacggcggtgttccagcttgaatcgcgcggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggttgcgttgttc
cgcccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcactccgactaccagtacgaaggcctcaagccggtactggcg
ccaacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggca
ggttataccctgggtggcgccgacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggtttcatcgaaggttgcgtggccaacaatattgatgcg
gacctcgccggtaacatcttcgacctggtagagaagttcgcgggctacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcctggctgaaaacccactac
ccggcgccattcatggccgcggtcctgtcggcggatatgcataacaccgacaaggtggtg
gtgctggtggaggaggtgcgcagcatgaagctgcgcctcgacgcgccggacgtgaacttc
tcggacttcaagttcaccgtcaacaacgacggccgtatcgtctacggccttggtgccatc
aagggtgtcggcgaaggcccggtggaggcgattgtcgaggctcgtgcccaaggcggtccc
ttcaaggacctgttcgatttctgtgaacgcatcgacctcaaacgggtcaacaagcgtacc
cttgatgcgctggtgcgcagtggcgcgctggaccgccttggcccgcacttccatgacgag
atcaaggcctaccacgccaacatcgacatcaaccgggcaaccttgctgtcggcgctgggc
gaggccatcaaggcagccgagcaggctgcgcataccgctgacagtggccatgtcgacctg
ttcggcagcatgttcgacgcggcagatgtcgacgtctatgccaaccatcgcaaggtgcgc
gagctcaccctcaaggagcgtctgaagggggagaaggacacccttggcctgtacctcacc
ggccacccgatcgacgagtacgagaccgagatccgccgcttcgcacgccagcgcatcgtc
gatctcaagccgtcgcgcgaaacccagaccatcgcgggcatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgttccgggcgg
atcgaggcatcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgat
gcgatggtggtggtggaaggcgaggtcagcaatgacgacttctccgggggcttgcgcctg
cgggtgaagcaggtgatgaccatggaagacgcgcgcaccaagctggccgagagcctgcgc
ctgaaggtggcgcacgacgcactgaagggcgaccggctgaagtggctgggcgagctgatc
acccgccatcgcggtgcctgcccgatcacgctggagtacaccggcagtgacgccaaggcc
atgctgcagtttggcgagcagtgggcgatcgacccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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