Pseudomonas alloputida: LU682_026015
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Entry
LU682_026015 CDS
T09345
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU682_026015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pald03019
]
LU682_026015
Enzymes [BR:
pald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LU682_026015
Messenger RNA biogenesis [BR:
pald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LU682_026015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WJR16557
LinkDB
All DBs
Position
complement(5608808..5610139)
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AA seq
443 aa
AA seq
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MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSTEAAS
AEPAVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaaccgctgctgcgcacgctgcagcaactggac
tacaccaccccgaccccggtgcaggccaaagccatccccgccgtgctggccggccgcgac
ctgatggccgcagcccagaccggtaccggcaagaccgcaggctttgccctgcctgtgctg
cagcgcctggcgctggagggcgagaaggtggccagcaactcgatccgcgccttggtgctg
gtacccactcgcgagctggccgagcaggtgcacaacaacgtgcgcgaatacgccgagaac
ctgccgctgactacttacgcggtgtatggcggggtcagtatcaatccacagatgatgcgc
ctgcgccggggtgtcgacctgctggtggctacccctggccgcttgctcgacctgttccgg
cagaacgccgtgaagttcaaccaggtgcagaccctggtgctggatgaagccgaccgcatg
cttgacctgggctttgccgaagagctgcagtcggtgtacgcggcactgccgcgcaagcgc
cagacgctgctgttttccgccaccttctccgatcagattcgcatgctggcggggctggcg
ctgaatgaccccctcagtatcgaagtgagcccgcgcaacgccacggccgccagcgtcaag
cagtggctggtgcctgtggacaagaagcgcaaggctgacctgttctgccacctgctgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgcaatggcgtcgatcagctg
gtggagcgcttgctggccgaaggcgtgaatgccgacggcatccacggtgaccgcccacag
gcaacccgccagcgtgcgctggacagcttcaaggcccgtgaggtgcaagtgctggtggcg
accgatgtggcggcccgtggcctggatatcgatgacttgccgctggtcgtcaacctcgac
ctgccgatcgttgccgaagactacgtgcaccgcatcgggcgtaccgggcgggcgggcaac
aagggcgaggcgatttcgctggtgtgtgcggatgaagtgcaactgctggcggccattgaa
gtgctgacccggcagaccctgccgcgccatgaagagccggatttcatccccgagcaccgg
gtgccgatgaccgatgccagtgggcaggttatcaagaaaccgaagaagcccaagaagccg
aaagaaaacagcgccaagcgcgggctggggcgttggatggacagcactgaagcggccagt
gcggaaccggcggtgaaggctgtacgcaaggtgccgagcttcaatggtgggccgcgcaag
cgtaagccgtga
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