Pseudomonas alloputida: LU682_027125
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Entry
LU682_027125 CDS
T09345
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU682_027125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pald03019
]
LU682_027125
Enzymes [BR:
pald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LU682_027125
Messenger RNA biogenesis [BR:
pald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LU682_027125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WJR16771
LinkDB
All DBs
Position
5855246..5857126
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AA seq
626 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR
KDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDPEEF
LDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRS
GGGEKRPPRANNGGGARRDGGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKLDR
FPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tacacccagccgacccccgtgcaacagcgggctattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcacagacaggtacgggtaaaaccggcggctttgccctgccgattctc
gagcgcctgttcccggccggccatcccgacaaatcacagcgccacggcccgcgccagcct
cgcgtgctggtcctgacgccgacccgcgaactggcagcccaggtgcatgacagtttcaag
gtctatgcccgtgacctgccactggtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccattgccaaaggcgttgatgtgctggtcgcctgcccaggccgcctg
ctcgacctcgccggccaaggcaaggtcgacctggcccacgtggaaatcctggtacttgat
gaagccgatcgcatgctcgacatgggcttcatccacgacgtcaagaaggtcctcgcccgc
ctgccggccaaacgccagaacctgctcttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgtatcgaggtcaccccgccgaacaccacc
gtcgagcgtatcgagcagcgggtatatcgcctgcctgccagccacaagcgtgccttgctg
gcgcacctgatcaccctgggcgcctgggaacaggtgttggtgttcacccgaaccaagcat
ggcgccaaccgcctggccgagtacctggaaaagcaaggcctgaccgccgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggccaacagcgtg
cgcgtactggtcgccaccgacatcgctgcccgcggcctggacatcgaccagttgccccat
gttgtcaacttcgagctgccgaatgtcgaggaagactacgtccaccgcatcggccgtacc
ggccgtgccggtcgttcgggcgaagctatttccctggtcgcgccagatgaagagaagctg
ctcaagagcatcgagcgggtgaccaagcagcgcatcgcggatggcgacctgatgggcttc
gacgccagccaggtagaagccgagaagcccgaagcacgcgagcgcccgcagaataacggc
cgcggtggccgcaaccagcaggcccgtggcgaaggtggtaaagacaccaacggcggccgc
aaggacaaaggcaaggacaaaggcaaagccaggcagcaagctgcggccaagccggacgac
aaggaaaagagcggcgacaagcagcaaccgcgcaagccgcgtgacaagaagtcacgcccg
cagcaggccagcaataacagcgtgccgaagccgccggcagaccgcgacccggaagagttc
ctggacgacgaactcgataacttcggtaaccgcgcggactatgtcagcccttaccagggc
aagaaccagggccgcaaccgccgcccgggtggtgctggccaaggtcaggggcaaggcaat
ggccaacgcagcaacgctggcggccagggccaagcccgcaatggcggccagccacgcagt
ggtggcggagaaaaacgcccgccccgcgccaacaacggtggcggtgcccgtcgtgatggc
ggcggtggccgtggtcgccctgcgcgtgacgatgctgcccggcaagagccggccgtgcgc
aacccgcgtcagccggaaaaacagccagtgatcattcgcaaggagtccaagctggaccgt
ttcccgacgcctgagcaactggatgacctgccaagccgcccacgcggtgagcgcccagcg
ctgctgacccgcaagggctga
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