Pteropus alecto (black flying fox): 102879653
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Entry
102879653 CDS
T02993
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pale
Pteropus alecto (black flying fox)
Pathway
pale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102879653 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pale03019
]
102879653 (MTREX)
03041 Spliceosome [BR:
pale03041
]
102879653 (MTREX)
03009 Ribosome biogenesis [BR:
pale03009
]
102879653 (MTREX)
03016 Transfer RNA biogenesis [BR:
pale03016
]
102879653 (MTREX)
Enzymes [BR:
pale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102879653 (MTREX)
Messenger RNA biogenesis [BR:
pale03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102879653 (MTREX)
Spliceosome [BR:
pale03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102879653 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102879653 (MTREX)
Ribosome biogenesis [BR:
pale03009
]
Eukaryotic type
Pre-60S particles
Helicases
102879653 (MTREX)
Transfer RNA biogenesis [BR:
pale03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102879653 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
102879653
NCBI-ProteinID:
XP_006912528
UniProt:
L5KLI9
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKAGKRLDGKLQSESTNIA
KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAKAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccactgcg
cccggaaccaaaaaagacaaggagaaggagaagggtaaatggaaggggccgccagggtct
gcagaaaaggccgggaaacgtcttgatggtaaattacaatcagagtcaaccaatattgca
aaaaccaagagagatgcagatttcgagggcacagatgaacccatttttggaaagaagccc
agggtagaagagtcaataactgaagacttaagtttggcagacttgatgcccagagtcaag
gtacaatcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcaaaagcaggaaaaactgtatgcgctgagtatgccattgcattggccttaagagaaaaa
cagcgtgtaatatttactagcccaattaaggctttgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgacgggagatgttactattaatcctacagca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcttgggttatatttgatgaaattcattacatgagagattcagagcgt
ggtgtggtatgggaagaaactatcattttacttccagataatgttcactatgtctttctt
tcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacataaacag
ccttgtcatgtaatttacacagattatcggcctactccattgcagcactacatttttcca
gctggaggggatggcctgcatcttgtagttgatgaaaatggtgacttcagagaagataat
tttaataccgcaatgcaagttcttcgagatgctggtgatttggcaaaaggagatcagaag
gggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaaggaattttcaacctgtaattattttcagttttagtaagaaagattgtgaagcctat
gcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtcgaagaa
gtattcagtaatgcaattgactgcttgtcggatgaagataaaaagctccctcaggttgaa
catgtacttcctcttttgaagcggggaattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattcttttttctgaaggattgataaaggccttatttgccaca
gagacttttgctatgggaattaacatgccagctagaactgttttatttacaaatgcccga
aaatttgatgggaaagatttccgatggatttcctcgggtgaatatattcaaatgtctggt
cgtgctggaagaagaggaatggatgatagaggaattgtaattcttatggtagatgaaaag
atgagcccaacaattggaaaacaactacttaagggctcagctgatcctctaaatagtgct
tttcatttgacctacaacatggttttgaacttactacgtgtagaagaaatcaatcctgaa
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattcccggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtagtcatctattataagattagacagcagcttgccaaactgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaagtcaaat
gttaagcctaattctggtgaactggatcctttatatgtagtagaagtactgctgcgctgt
agcagagaaagcttaaaaaattcagctactgaggctgcaaagccagctaaacctgatgag
aaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagcagtgtt
agactttacattcctaaagaccttcgacctgtggacaatagacagagtgttttaaaatcg
atacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctattgacgat
atgggcattcaggatcaggggctgaaaaaagtcatccagaaagtagaggcttttgagcat
cgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtatacgctttgt
gaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaagaaagca
agaacagtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagattggga
tttgccacttcttctgatgtcatagagatgaaaggacgtgtggcttgtgagataagcagt
gctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctatctgca
gaacaggcaacggcactactaagctgctttgtgtttcaggagaattctagtgagatgccc
aaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaacgaatt
gcaaaagtttcagcagaagcaaaattggaaattgatgaggaaacttacctaagctcattc
aaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcccatatc
tgcaaaatgacagatgtctttgaaggcagcataattcgatgtatgaggcgcctggaagaa
ttgcttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
tttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctttactta
tag
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