Pteropus alecto (black flying fox): 102880920
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Entry
102880920 CDS
T02993
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X3
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pale
Pteropus alecto (black flying fox)
Pathway
pale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102880920 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pale03019
]
102880920 (EDC4)
Messenger RNA biogenesis [BR:
pale03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102880920 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102880920 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
102880920
NCBI-ProteinID:
XP_006909842
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPTGGPSSESQRPSNAYNGDLNGLLVPDPLCSGDGTS
ANKPGLRAMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLTFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTYL
SEGALSPDGTVLATASHDGFIKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFAFPTAFGDSQPELSSGGLGSAAHGSQPDLRRIVELPAPADFLSLSTETKPKLMTPD
AFMTSSTSLQQISASPSNSSGGSSSGSSSSSSSSSLTAVSAMSSTSAVDTSLSRPPEELT
LSPKLQLDGSLTMSSSSSLQASPRSLLPGLLPGPADKLTPKGPGQVPTAASGLSLELQEV
EPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAAS
ALHLLSPRPRPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATASDSQVWPTAPDITRE
TCSSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASIASAAAGFG
TKVSTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSTAGSRLMEHQVTEPPEDWPAIIWQ
QQRELAELRHSQKELLQRLCTQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTA
VEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRSLVSTLQGATEQMAATVSNSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQASVTSSIMQAMRSAAGTPVPA
AHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQP
VLLSFIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAE
PYNSLGKAARRLSLMLHGLVTPTLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctacgggacatcctc
aagctggaccggcccacggggggccccagttcagagagccaacggccatctaacgcctac
aatggggacctcaatggactcctggtcccagaccccctctgctcaggtgatggtacttca
gcaaacaagcctggtctccgggccatgccacctattaacctgcaggagaagcaggtcatc
tgcctttcaggagatgacagctctacctgcattgggattttggccaaggaggtggagatt
gtggccagcagtgactctagcatctcgagcaaggcacgagggagcaacaaggtgaaaatc
cagcctgttgccaagtatgactgggagcagaaatactactacggcaacctgattgctgtg
tccaactccttcttggcctatgccattcgggctgccaacaatggctcagcgatggtgcgg
gtgatcagcgtcagcacttcggaacggaccttactcaagggcttcacaggcagtgtggct
gacctgacctttgcacacctcaactcttcacagctggcctgcctggatgaggcaggcaac
ctgtttgtgtggcgcttggctctggttaatggcaaaattcaagaagagattttggttcat
atccggcagccagagggtacaccactgaaccactttcgtagaatcatctggtgccccttc
atccctgaggagagtgaggattgctgtgaggagggcagcccaacggtggccctgttgcat
gaagaccgggctgaggtgtgggacctagacatgctccgctccaaccacagcacctggcct
gtggatgtcagccaaatcaagcagggcttcattgtggtgaaaggccatagcacatacctg
agtgaaggggccctctcacctgatgggactgtcctggccactgcaagccatgatggcttc
atcaaattctggcagatctacattgaggggcaggatgagccaaggtgtctgcacgagtgg
aagcctcatgatgggcggcccctttcctgcctcctattctgtgacaaccacaagaaacag
gaccctgatgtccctttctggaggttcctcattactggcgctgaccagaatcgggagctg
aagatgtggtgcacagtgtcctggacctgcctgcagactattcgcttctccccagatatc
ttcagctcagtgagtgttccccctagcctcaaagtttgcctggacctctcagcagaatac
ctgattctcagtgatgtgcaacggaaggtcctctacgtgatggagctgctgcagaaccag
gaggagggccgtgcctgcttcagctccatctctgagttcctgcttacccaccctgtcctg
agctttggtatccaggtcgtgagtcgctgccgactgcggcacactgaggtgctgcctgcc
gaggaagagaacgacagcctaggggctgatgggacccacggagctggtgccatggagtct
gcagctggtgtgctcatcaagctcttctgtgtgcatactaaggctttgcaagatgtgcag
atccgctttcagccacagctaaaccctgatgtggtggccccgctccctacccacactgcc
catgaggactttgcttttcctacagcatttggagattctcagcctgaactgagctccggg
gggctgggatcagctgctcatggctcccagcctgacctccgacgcattgtggagctgcct
gcacctgctgacttccttagtctgagcactgagaccaagcccaagctgatgacacctgat
gctttcatgacatctagcacctccctgcagcagatctctgcatcccctagtaatagcagc
ggcggcagcagcagtggtagcagcagcagcagcagcagctcctctcttacagctgtgtct
gccatgagcagtacctcggctgtggacacctccttgtccaggccccctgaggagctgacc
ttgagccccaagctgcagctggatggcagtttgacaatgagcagcagtagcagcctgcag
gcaagcccacgcagcctcctgcccggcctgttaccaggtccagctgacaaattgactccc
aaagggcctgggcaggtgcctactgctgcctctggactgtccctggagctgcaggaagtg
gagcccctggggctaccccaggcttcccctagccgtactcgctcccctgatgttatttcc
tcagcttccactgccctgtcccaggatatccctgagatcgcgtctgaggccctgtcccgt
ggctttggctcctctgctcctgagggccttgaaccggacagtatggcctcagctgcttca
gcactacacttgctgtccccacggccacggcccgagcttgggccccagcttagcctggat
ggaggccctggggatggggatcggcatagtaccccttccctcctggaggcagccttgacc
caagaggctacagcctctgacagtcaggtctggccaacagcaccagacattactcgggag
acctgcagcagcctggcagaaagccctaggaatggccttcaggaaaagcacaagagcttg
gccttccaccgaccgccttatcatctgctgcagcaacatgacagccaggatgccagtgct
gaacaaagtgaccatgatgatgaggtggccagcattgcctctgctgcagcgggctttggc
accaaagtttccactccacggcttcctgccaaggactggaagaccaagggatctcctcgg
gcctcacctaagctcaagaggaagggcaaaaaggatgatggggattcgactgcgggatcc
cggctcatggagcaccaggtgacagagccccctgaggattggcctgcaataatttggcaa
cagcagagagagctggcagagctgcggcacagccaaaaagagctactgcagcgtctgtgc
acccagctcgaaggcctgcagagtaccgtcacaggccatgtagaacgtgccctcgagtcc
cggcatgaacaggagcagcggcggttggagcgggcactggcagaagggcagcagcggggt
gggcagctacaagagcagctgacgcaacagctgtcacaggcactgtcttcagctgtggct
gggaggctggaacgcagcatacgggatgagatcaagaagacagtgcctccatgtgtctct
aggagtctggaacccgtggcaggccaactgagcaactcagtggccaccaaactcacagct
gtggagggtagcatgaaagagaatatctccaagctgctgaagtccaagaacttaacagac
gctattgcccgagcagctgcagacacgttacaagggccaatgcaggctgcctaccgtgaa
gccttccagagtgtggtgctgcctgccttcgagaagagctgccaggccatgttccaacag
atcaatgatagcttccgactgggcacacaggaatacttgcagcagctagagagccacatg
aagagccggaaggcacgagaacaggaggcgcgggagcctgtgttggcccagctgcggagc
ctggtcagcacactgcagggtgccactgagcagatggcagccactgtgtctaacagtgtt
cgggctgaggtgcaacaccagctgcatgtggctgtgggcagcctgcaggagtcaatttta
gcacaggtacagcgcattgttaagggtgaggtgagtgtggcactcaaggagcagcaggcc
tccgtcacctctagcatcatgcaagccatgcgctcagctgcaggcacacctgtcccagct
gcccacctcgactgccaggcccagcaagcccatatcctgcagctgctgcagcagggccac
ctcaatcaggccttccagcaggccctcacggctgctgacctgaacctggtgctgtatgtg
tgtgaaactgtggacccaggccaggtttttgggcagccaccctgcccactctcccagccc
gtgctcctttccttcatccagcagctggcctctgaccttggcactcgaactgacctcaag
ctcagctacctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgggac
cacatgggttccgtcatggcccaggtgcgccagaagttattccagttcctgcaggctgag
ccatacaactcacttggcaaagcggcccggcgtcttagcctcatgttgcatggccttgtg
acccccaccctcccttag
DBGET
integrated database retrieval system
