Pteropus alecto (black flying fox): 102888944
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Entry
102888944 CDS
T02993
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pale
Pteropus alecto (black flying fox)
Pathway
pale03030
DNA replication
pale03410
Base excision repair
pale03420
Nucleotide excision repair
pale03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102888944 (LIG1)
03410 Base excision repair
102888944 (LIG1)
03420 Nucleotide excision repair
102888944 (LIG1)
03430 Mismatch repair
102888944 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pale03032
]
102888944 (LIG1)
03400 DNA repair and recombination proteins [BR:
pale03400
]
102888944 (LIG1)
Enzymes [BR:
pale01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102888944 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102888944 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102888944 (LIG1)
DNA replication proteins [BR:
pale03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102888944 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102888944 (LIG1)
DNA repair and recombination proteins [BR:
pale03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102888944 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102888944 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102888944 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
102888944
NCBI-ProteinID:
XP_024904617
LinkDB
All DBs
Position
Unknown
AA seq
944 aa
AA seq
DB search
MQRSIMSFFYPKTEGKAKKPEEETPSSVGETEPPPKAALKERNGMVPESDSPVKRPGRKA
ARVLGSEGEEEDGARTPPWGQKRGGLAPGAQPGSGPRLPARHPEAAHRPWETCPGHGELA
ATADIWDHELPKRRTARKQLPKRTRGGEQSEDEDREAKRKKEGASNGNPASQKYSVRKKK
ECDLILKTEIPRAKAETPTESPPESEGAEEKEAEEEDLPTVPPELPEACEAEPGAAVGQG
LREEDRAKPPARGPKTLSSFFAPRKPAVKTEVKEEGSGTPRKEAPEGPPEPSGYNPAQNS
YHPVEDACWKQGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPSDLLPILY
LSLNHLGPPQQGLELGIGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRL
MLPPPTLTASGVFAKFRDIARLTGSASTAKKIEIIKGLFVACRHSEARFIARALSGRLRL
GLAEQSVLAALAQAVSLTPPGQGFPPAVVDAGKGRTAEARKTWLEEQGMILKQTFCEVPD
LDRVVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVGEVLKRFEEAAFTCEYKYDGQ
RAQIHLLEGXXXXXXQEDNTGKYPDIISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPF
QVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVRGPLSRRRQLLRENFMETEGEFVF
ATSLDTKDTDQIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGD
TLDLVVIGAYLGRGKRAGRYGGFLLAAYDEDSEELQAICKLGTGFSDDALEEHHHRLQAL
VLPSPRSYVRADGAVAPDHWLEPSAVWEVKCADLSLSPIYPAARGLVDSEKGVSLRFPRF
IRVREDKKPEEATTSAQVACLYRKQSQVQNQQGSHSESDPEDFY
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcatgtcatttttctaccccaagacagagggcaaagcgaagaagcca
gaggaggagacgcccagcagcgtcggggaaacagagcccccgccgaaggcggcgctgaag
gagaggaacggaatggtgcctgagagcgactctccggtgaagaggccggggaggaaggcg
gcccgcgtcctgggcagtgagggggaggaggaggacggagcccgcacgcccccctggggc
cagaagcgtggtggcctcgccccgggagcgcagcccggctccggcccgcgcctccccgcc
cggcatcccgaagcggcgcacaggccctgggagacctgtccgggacatggggagctggcg
gccactgctgacatttgggatcatgaactcccgaagcggcgcacagctcggaagcagctt
cctaaacggacacgtggcggggagcagagcgaggacgaggacagagaagccaagaggaag
aaggagggagccagcaatggaaacccagcttcgcagaaatacagcgtcaggaagaagaag
gaatgcgacctgatactgaaaactgaaataccccgagctaaagcagagaccccaacagaa
agtcccccagaatcggaaggggccgaagagaaggaggcagaagaggaggacctgcccacg
gtgccccccgagctccccgaggcctgcgaagcagagcccggggcggccgtgggccagggg
ctgcgggaggaggaccgggcgaagcctcccgccaggggtcccaagacgctcagcagtttc
ttcgctccccggaagccggcagtcaaaacagaagtgaaagaagaggggtctggcacccca
aggaaggaggcgcccgagggcccgccggagccatccggctacaatcctgcccagaacagc
taccatcccgttgaagacgcctgctggaagcagggccaaaaagtcccttatctggcagtg
gcccggacgttcgagaagatcgaggaggtttctgctcggctccgcatggtggagacgctg
agcaacctgctgcgctccgtggtggccctgtcgccgtctgacctcctccccatcctctac
ctcagcctcaaccacctggggccgccccagcagggcctggagcttggcattggggacggt
gtccttctcaaggcagtggcccaggccacaggtcggcagctcgagtctgtccgggctgag
gcagctgagaagggtgacgtgggcctggtggctgagaacagccgcagcacccagaggctc
atgctgcccccgcccaccctcaccgcctctggggtcttcgccaaattccgggacatcgcc
cggctcactggcagcgcgtccacagccaagaagatagagatcatcaaaggcctgtttgtt
gcctgccgccattcggaagcccggttcatcgccagagccctgagcggacggctgcgcctc
gggctggcagagcagtcggtgctggccgccctcgcccaggccgtgagcctcacgcccccc
gggcaaggcttccctccagccgtggtggatgccgggaagggcaggacagcagaggccagg
aagacgtggctggaggagcaaggcatgatcctgaagcaaacgttctgcgaggtgcctgac
ctggaccgcgttgtccccgtgctgctggagcacggcctggagcggctcccggagcactgc
aggctgagtccaggggtccccctgaagccaatgttggcccacccgacccggggcgtcggc
gaggtcctgaagcgctttgaggaggcggctttcacctgcgagtacaaatatgatgggcag
agggcacagatccacctcctggaaggcngnnnnnnnnnnnnnnatcaggaagacaatacc
gggaagtaccccgacatcatcagccgcatccccaagatcaaactcccatccgttacgtcc
ttcatcctggacgccgaagctgtggcctgggaccgggagaagaagcagatccagccgttc
caagtgctcaccacccgtaaacgcaaggaggtggacgccgcggagatccaggtgcaggtg
tgtctgtacgcctttgacctcatctacctcaatggagagtccctggtgcgtgggcccctc
tcccgacgccggcagctgctccgggagaacttcatggagacggagggcgagtttgtcttc
gccacctccctggacaccaaggacacggaccagatcgccgagttcctggagcagtcggtg
agagactcctgcgaggggctgatggtgaagaccctggacgtcgacgccacctacgagatc
gccaagaggtcgcacaactggctcaagctgaagaaggactacctggacggcgtgggggac
acactggacctcgtggtgattggcgcctacctgggccggggcaagcgggccggccgctac
gggggcttcctcctggccgcctacgacgaggacagcgaggagctgcaggccatatgcaag
ctgggaaccggcttcagcgacgacgcgctggaggagcatcaccaccgcctgcaggccctg
gtgctgcccagcccgcgctcctacgtgcgggcggacggggccgtggcccccgaccactgg
ctggagcccagcgccgtgtgggaagtcaagtgcgccgacctctctctgtcccccatctac
cccgccgcccgcggcctggtggacagcgagaagggcgtctccctgcgcttccctcggttc
atccgcgtccgtgaagacaagaagccggaggaggccaccaccagtgcccaggtggcctgt
ctgtacaggaagcagagtcaggttcagaaccagcaaggctcacactcggagtccgaccca
gaggatttctactag
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integrated database retrieval system
