Pantoea alfalfae: K6R05_03820
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Entry
K6R05_03820 CDS
T09440
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
palf
Pantoea alfalfae
Pathway
palf03410
Base excision repair
palf03430
Mismatch repair
palf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K6R05_03820 (recJ)
03430 Mismatch repair
K6R05_03820 (recJ)
03440 Homologous recombination
K6R05_03820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_03820 (recJ)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K6R05_03820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K6R05_03820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6R05_03820 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QZX96374
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All DBs
Position
796236..797972
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AA seq
578 aa
AA seq
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MLKQEVELRRREVTVDDALPATLPPLLKRLYLQRGVCDAAELERGAKNLLPYQSLSGIES
AVELLHQALLDGRRIMVVGDFDADGATSTALTVMALRSMGGNNVQYLVPNRFEDGYGLSP
EVVEQARARGAAMILTVDNGISSHAGVECAHQHGIPVLITDHHLPGETLPAAEAIVNPNL
PDCNFPSRALAGVGVAFYLMLALRAHLRTQGWFGATRTEPNLAEMLDLVALGTVADVVPL
DVNNRILVWQGLSRIRAGKCRPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDM
SVGVALLMTDDLSQARMLASELDALNQTRKEIEQGMQSEALALCQALEREQSDLPLGLAF
YHPEWHQGVVGILASRLKERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLNP
GLMLKFGGHAMAAGLSLETARYEEFRQRFADLVGEWLDGEALQGIIWSDGALQPQEFSLQ
TAEMLREAGPWGQAFPEPAFDGKFKLLQQRLVGERHLKVMVEPLDGGPLIDGIAFNVDTT
LWPDSSIRQVELAYKLDINEYRGNRSVQLIIDHIWPLN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
gtgttaaaacaggaagtggaactccgtcgccgtgaggtgacggttgacgatgcgctaccg
gccacgctgccgccgctgctgaaaagactttatctgcaacgcggcgtgtgtgacgccgcg
gagctggagcgcggtgcgaagaacctgctgccctatcagtccttaagcgggattgagagc
gccgtggagttgctgcatcaggcgctgctggatgggcgtcgcattatggtggtaggcgac
tttgatgccgatggcgcaaccagtaccgcactgacggtgatggcgttgcgcagcatgggt
ggcaacaacgtgcagtatctggtgcctaaccgctttgaagatggttatggcctcagtccg
gaagtggttgagcaggcgcgcgcacgcggtgctgcaatgattctgacggtcgataacggc
atctcctctcatgccggtgtggagtgcgcacatcagcacggtattccggtgctgattacc
gaccaccacctgccgggcgaaaccctgccggccgctgaggcgatcgttaatcccaatctg
ccggactgcaactttccttcacgcgcgctggcgggcgtgggcgttgcgttctatctgatg
ctggcgttgcgcgcccatctgcgtacccagggctggttcggcgctacccgcactgaaccg
aatctggcagagatgctggatctggtcgcgctcggcacggttgctgatgtggtgccgctc
gacgttaataaccgcattctggtgtggcaggggctcagccgcatccgggccggaaaatgt
cggccaggcatccgggcgctgctggaaattgcgaatcgcgatgcccgtcagctggcggcc
agcgatctcggctttgcgctggggccacggctcaacgccgcaggccgcctcgacgatatg
tcggtgggcgtggcgctgttaatgaccgacgatcttagccaggcgcgcatgctggccagt
gagctggatgcgctgaaccagacgcgcaaagagatagagcagggcatgcagagtgaagcg
ctggcgctgtgtcaggcgctggagcgtgaacagagcgatctgccgctgggactggccttc
tatcatcccgaatggcatcagggcgtggtgggcattctcgcctctcgtctgaaagagcgt
ttccatcgtccggtcattgcctttgcgcccgcgggcgacggcacgttgaaaggctcgggc
cgctcgattgccggtctgcatctgcgcgatgcgctggagcgcctggacacgctgaatccc
ggcctgatgctgaagttcggtggtcacgccatggcggccggtttatcactggaaaccgca
cgctacgaggagtttcgtcagcgctttgccgacctggtcggagagtggctggatggcgaa
gccctgcagggcatcatctggtctgatggcgcgttacagccgcaggagttttcgctgcag
accgcagagatgctgcgcgaagccggtccctggggccaggcgttcccggaacccgcgttt
gacggcaaatttaagctgctgcaacagcgtctggtgggcgagcgacatctgaaagtgatg
gttgagccgctggatggtgggccgctgatcgatggtatcgcctttaatgtcgatactacg
ctgtggcccgacagcagtattcgtcaggtcgaactggcgtataagctggatattaatgag
tatcgcggtaaccgctcagtgcagctgatcattgaccatatctggccgctgaactga
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