Pantoea alfalfae: K6R05_03975
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Entry
K6R05_03975 CDS
T09440
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
palf
Pantoea alfalfae
Pathway
palf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K6R05_03975 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_03975 (recC)
Enzymes [BR:
palf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K6R05_03975 (recC)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K6R05_03975 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QZX96403
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All DBs
Position
827898..831275
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AA seq
1125 aa
AA seq
DB search
MFHVYHSNQLDVLKILAAAVIKHDPLDDPFASEMVLVQSPGMAQWLQMELAQTFGIAANI
EFPLPASFIWEMFVRVLPDIPVESAFSKASMGWKLMHRLPVMLEHEEFVSLRHYLHDDGD
KRKLYQLSSRVADLFDQYLVYRADWLNSWERGETIEGLGEAQRWQAALWRDLVTYTQALR
QPEWHRANLYSRFIQTLEQAKTTPENLPKRVFICGISALPPVYLQALQALGRHIDIHLLF
TNPCRDYWGDIQDYAFLAKLQSRQRRRHGADESRGLFRDAEQAPALFNDAGEQQLTNPLL
ASWGKLGRDNLYLLSQMESNDDIDAFVDVEPDNLLHCMQHDLLNLQDNAIIGLNAAELAH
SDKKRCLDPDDRSIVVQVCHSAQREVEVLQDHLLAMMETDPTLKARDIIVMVADIDAYAP
FIQAVFANAPPDRYLPFAISDRRASQAHPAIVAFLNLLALPDSRFVSEDVLALLDVPALA
AHFSIDESGLRLLRRWVSESGVRWGLDDASVEALSLPITGQHTWRFGLQRMLLGYAMESH
NGDWEGILPYDESSGLVGELAGHLAELLSRLNHWRQLLAEPRPLVAWLPLCRELLNAFFS
PDAETEAALLLVEEQWQQLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAGQIN
FCTLMPMRSIPFQLVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYLFLEAM
ISAQQQLYISYIGRAIQDNTERYPSVLVTELLDYIGQSFYLEGDGHLELDESAARVRMHL
QHLHSRMPFAAENFQPAARLQSFAREWLPAAQGAGQPQPAFVQPLEAPLIDALTLEAFLR
FWRHPVRAWFHQRLGVSFWLEENELPDSEPFALDNLERYQINAQLLNALVEGEDTQRLYA
HHRAAGNLPYGAFGELFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQISLTGWLTQV
QSDGLLRWRPGVLNMNDGLLLWLEHLVYCALGGTGSSRMFGRQQSRWCFLAVPQAEAIAA
LNEYVAGYLAGMRQPLMLLNKSGGAWLNASYDKKSQQLLTDEATQLKARNRLLTAWQGNY
QVEGEGGDPYLQRLCRVLDEPQLQQITEAAQHWYLPVLAAHQDDE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacgtttatcactcaaatcagcttgatgtgctgaagattctggcggcggcggtg
attaaacatgaccctcttgatgatcctttcgcctcagaaatggtgctggtgcagagcccg
ggaatggcgcaatggctgcagatggagctggcgcaaacctttggcattgccgccaatatc
gaatttccgctgcctgccagttttatctgggagatgttcgtccgcgtactgcccgatatc
ccggtagaaagtgctttcagcaaggccagcatgggctggaagctgatgcaccggctgcca
gtgatgctcgaacatgaagagtttgtctctttacgccactatctccatgacgacggcgac
aaacgaaaactgtatcagctcagttcacgcgtggccgatctgttcgaccagtatctggtt
tatcgtgccgactggctcaacagctgggaacgtggcgaaaccattgaggggctgggtgaa
gcgcagcgctggcaggccgcactgtggcgtgatctggtaacttatacccaggcgctgcgc
cagcccgaatggcaccgtgccaacctctattcgcgatttattcagacgctggagcaggcg
aaaaccacgccagaaaatctgccgaaacgggtcttcatctgtggtatctctgcgctgccg
ccagtctatctgcaggcgttgcaggcgctgggacgtcacatcgacatccatctgctgttc
accaatccctgccgcgactactggggcgacattcaggattatgcgtttctggcgaaactg
cagagccgtcagcgccgacgtcatggtgccgatgaatcacgcggacttttccgggatgca
gaacaggcaccggcactgtttaatgacgctggcgaacagcagctcactaacccgctactt
gcctcatggggcaagctggggcgcgataacctgtatctgctcagtcagatggagtcaaac
gacgatattgatgcgtttgtggatgtagaaccggataacctgctgcactgcatgcagcac
gatcttctcaacctgcaggataacgccatcatcggactgaatgcggcggaactggcgcat
agcgataagaagcgctgtctggatccggatgaccgctctattgtggtacaggtctgccac
agcgctcagcgtgaagtcgaagtattgcaggatcatctgctggcgatgatggagaccgat
ccgacgctgaaagcgcgtgacattatcgtcatggtggcagacatcgacgcctacgcgccg
tttattcaggcggtgttcgccaacgcgccccctgatcgctacctgccgtttgcgatttca
gaccggagggccagtcaggcgcatccggccattgtggcatttctgaatctgctggcactg
ccggacagccgttttgtctcagaggatgtgctggcgctgctggatgtcccggcgctggct
gctcatttctctattgatgaaagcggcctgcgcttactccggcgttgggtcagcgaatcg
ggtgtgcgctgggggctggatgatgccagcgtggaagcgctgtcactcccgattaccggc
cagcacacctggcgctttggcctgcagcgcatgctgctgggctatgcgatggagagccac
aacggtgactgggaagggattctgccttatgacgagtcgagtggtctggtgggggaactg
gcgggacatctggctgagctgctttcccggcttaatcactggcggcagctgctggccgaa
ccccgtccgctggtcgcctggctgccactgtgccgggagttgctgaatgcctttttcagc
cctgatgcagaaaccgaggctgctctgctgctggtggaagagcagtggcagcaattgatc
gaatatggcatggatgcgcgctttgaagaggcgattccggtggcgctgctgcgcgatgat
ttacgtagccggcttgatcagcagcgcatcagccagcgttttctggctggacagattaac
ttctgcaccctgatgccgatgcgctccattccttttcagctggtctgtctgcttggcatg
aacgacggcgtctatccccggaccctggcaccgttaggctttgacctgatgcagcagcag
tcccgcaaaggcgaccgcagccgccgcgatgatgatcgctacctcttcctggaggcgatg
atttcggcacagcagcagctctatatcagttatatcggccgcgcgatacaggataatacg
gaacgctacccttcagtactggtcacagaactgctggattacattggtcagagtttttat
ctggagggtgacggtcatcttgagctggatgagagtgccgcgcgggtgcggatgcacctg
cagcacctgcacagccggatgccatttgccgcggaaaacttccagccggctgccagactc
cagagcttcgcccgtgagtggctgcctgccgcgcagggagcagggcagccgcaacccgct
tttgttcagccgctggaagcgccgctaattgacgcgctcacgctggaggcgttcctgcgc
ttctggcgacatccggtccgcgcctggttccaccagcggctcggcgtgagtttctggctg
gaggagaacgaactgcccgacagcgagccatttgccctggacaatctggagcgttaccag
atcaatgcgcaactgctgaatgccctggtcgaaggcgaggatactcagcgactttatgcg
caccatcgtgcggccggtaatctgccttatggcgctttcggtgagctgttctggcaggcg
cagcgcgatgagatgcaggaagtagcggcagaagtggtcacccaacgcagcgacggcgag
agctgggaagtgaatctgcaactggagcagatcagcttaaccggctggctgacgcaggta
cagagtgatggattgctgcgctggcggcctggcgtgctcaacatgaacgacggactgtta
ctctggctggagcatctggtctactgcgcactgggcggcaccggcagcagccggatgttt
ggccggcagcagagccgctggtgtttcctcgccgtaccgcaggctgaggcgatcgctgcg
ctgaatgaatatgtcgcaggctatctcgcgggtatgcgccagccgctgatgttgcttaac
aagagtggcggcgcgtggctgaacgccagctatgacaaaaaaagccagcagttgctgacc
gatgaagcgacgcagctcaaagcgcgtaatcgactgctgaccgcctggcagggtaactat
caggtggagggcgagggcggcgatccctatctgcagcgtctttgccgtgtgctggatgag
ccacaactacagcagataactgaggcggcacagcactggtatttaccagtgctggctgca
catcaggatgatgaatag
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