Pantoea alfalfae: K6R05_04135
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Entry
K6R05_04135 CDS
T09440
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
palf
Pantoea alfalfae
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palf03009
]
K6R05_04135 (rlmD)
Enzymes [BR:
palf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K6R05_04135 (rlmD)
Ribosome biogenesis [BR:
palf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K6R05_04135 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
Ribosomal_L22
TRM5-TYW2_MTfase
MTS
Methyltransf_23
PDGF
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
QZX96432
LinkDB
All DBs
Position
868172..869488
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYVAKQRVTTQQRITVTIEELDPFGQGVARHKGKTLFVTGALPGEQAEVVLTEDKRQ
FARAKVTRLISRSPERVTPRCPHYDRCGGCQQQHADVALQQQSKSQALSRMLSQAAAQNV
AVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEASNDLVDIQHCPILAPELEALLV
PLHQCLSELRAVRRPGHVELVLADNGPLMILRHLDALHASDREKLEQFSHKHQLMLFLDA
GDEALTALSESTPFYHSHQLKLTFSPQNFIQVNDAVNQQMVAKAIAWLDLQPEDRVLDLF
CGMGNFTLPIGIFVHNVVGVEGIAALLRQAAYNADLNNLKNVSFFQHNLEEEVSRQPWAA
QGFNKVLLDPARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQTLLSAGYQLERVAML
DMFPHTRHLESMVLFRKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctacgttgcaaaacagcgcgtgacgacgcaacaacggatcaccgtcacc
attgaggagctcgacccgttcgggcagggggtggcgcgccacaagggcaaaacccttttt
gtcacgggtgctctgccgggtgaacaggcggaggtcgtgctgacagaggataaacgtcaa
tttgcccgggcgaaagtgacacgactgattagccgcagcccggagcgcgtcacgccgcgc
tgcccgcactacgatcgctgcggcggctgccagcagcagcatgccgatgtggcgctgcaa
cagcagagcaaatcccaggccctgagccggatgctgagccaggccgcagcacagaacgtg
gcggtagatgaggtgatcgccggtcagccctggggctaccgtcgtcgcgcccgtctgggt
ctgcaatggcaaaataaagcgcaacgcttacagatgggctttcgtcaggaagccagcaac
gatctggtcgatattcagcactgccccattttagcgcccgaacttgaagcgttactggtt
ccgctgcaccagtgcctcagtgagttgcgcgccgtcaggcgtcccggacatgtggaactg
gtgctggcggataacggcccgctgatgattctgcgccatcttgatgcgctgcatgccagc
gatcgtgaaaaactggaacagttttcgcataagcatcagcttatgctgttcctggatgcc
ggtgatgaagcattgaccgcgttaagtgaatcgacgccgttttatcattcgcaccagctt
aagctaaccttcagcccacagaattttattcaggttaacgatgcggttaatcagcagatg
gtcgcgaaggcgatcgcctggctcgatctgcagccggaagaccgggtgctggatctgttt
tgcggcatgggaaacttcacacttcctataggaatcttcgtacataatgtggttggtgtg
gaggggattgcagcattactacggcaggcagcgtataatgctgatttgaataatcttaaa
aatgtcagtttctttcagcataatctggaagaagaggtgtcgcgccagccgtgggcggca
cagggatttaacaaggtattactcgatccggcacgcgccggggctgcgggcgtcatggcg
catgtggttaaacttgcaccagaacgcgtggtctatgtttcgtgtaatcccacaacactc
gcccgcgacagtcagacattgctgtcggcaggctaccaattggaaagggtcgcgatgctg
gatatgttcccacatacccgtcatctcgaatccatggtgctgttcagaaaaacataa
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