Pantoea alfalfae: K6R05_06885
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Entry
K6R05_06885 CDS
T09440
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
palf
Pantoea alfalfae
Pathway
palf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
K6R05_06885 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_06885 (sbcB)
Enzymes [BR:
palf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
K6R05_06885 (sbcB)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
K6R05_06885 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K6R05_06885 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K6R05_06885 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QZX96929
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All DBs
Position
complement(1481757..1483184)
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AA seq
475 aa
AA seq
DB search
MNNDRVQPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQP
EAVMITGITPQIAMSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFY
DPYGWAWQNGNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAH
DAMSDVYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARG
NTSWIVPLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLV
HINKCPVLAPASTLRPEDAARLGIDRQHCLTNLALLRQQPDVREKLVTLFAEAEPFTPSE
DVDTQLYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDD
AEQQRWLEHRRDVLNGDRVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELVS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgaataacgaccgcgtacagcccacttttctgtttcacgattatgagaccttcggtacc
agcccctctcgtgaccggcccgcccagtttgccggcctgcgcaccgacagtgagtttaat
ccggtcggcgagcctgaagtgttctactgccgtccgcctgatgactatctgccacagccc
gaagcggtaatgattaccggcatcaccccgcagatagcgatgagccgcggcgtcatcgaa
gcagagtttgccgaacgcattcataagctgttcaccaccgaacaaacctgcgtggtgggc
tacaacaacgtacgtttcgatgatgaagtgacgcgtaatatcttctatcgcaacttttat
gacccttatggctgggcctggcaaaacggcaactcacgctgggacctgctcgacgtgatg
cgtgcctgctatgcgctgcggcctgacgggatcaactggccggaaaatgaagaaggcttt
cccagcttccggctggagcatctgaccaaagccaacggcgtggcccatgaaaatgcgcac
gatgcaatgtccgatgtttacgccacgctggcgatggcaaagctggtaaaagagaagcag
ccgaaactgtttgagtttttgtttacccatcgcaacaaaaacaagctgatgaacctgatc
gacatcccgcagatgaaaccgctggtccatgtctctggcatgttcggcgccgcgcgcggc
aacaccagctggatcgtgccgctggcctggcatcccgataaccggaatgcgctgatcgtg
gtggatctggcaggcgatatgtcaccgctgctgcaactggatgctgacacgctgcgtgaa
cgtctttacacgccgaaaaacgacctcggcgatctgcctgcggtaccggttaaactggtg
catatcaacaagtgtccggtgctggcacctgccagtacgctgcgtccggaagatgcggcc
cgtcttggtattgatcgtcagcactgtctgacgaatctggcgctgttgcgtcagcagcct
gacgtgcgggaaaaactggttacgctgtttgccgaagccgagccgtttacaccgtcagag
gatgtggacacgcagctctacgatggattcttcagcgatgccgatcgcgccgggatgaac
attattcgtcagaccgcgccggccaatctgcctgcgcttgacctgagctttgagagtgcg
cgggtggcgaaactgctgttccgctatcgggcgcgtaatttccccggcacgctggatgat
gccgagcaacagcgctggctggagcatcgccgtgacgtactgaacggtgatcgggtgcag
gcgtttatgcaggaactggaaggactggctaatctgcatgaagctgatgcagaaaaggtt
gggcagctcaaagcgctctatctttatgcgcaggagctggtttcctga
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