Pantoea alfalfae: K6R05_08450
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Entry
K6R05_08450 CDS
T09440
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
palf
Pantoea alfalfae
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
palf03016
]
K6R05_08450 (rnd)
Enzymes [BR:
palf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K6R05_08450 (rnd)
Transfer RNA biogenesis [BR:
palf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K6R05_08450 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QZX97213
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Position
1818150..1819271
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AA seq
373 aa
AA seq
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MNYSLIDQDEQLADVCQKARQHTAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNI
RDWSPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFAS
MVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAAL
SECDNLCQRRLDSVAPDEAWRDITNAWQLRPRQLAALQRLAAWRLKLAREKDMAVNFVVR
EEHLWKVARFMPGSLGELDHLGLSGHEIRFHGKTLVALVAEAEALDENELPAPLGNLIDH
PHYKQVFKAMKALVQQVSEQSGFSQELLASRRQINQVLSQHWGLKPQGRQPELLTGWRGE
LLKPGIEEILAGC
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaattattcccttatcgaccaggatgaacaactggctgacgtgtgtcagaaagcccgc
cagcatacagcggtggcactggacaccgaatttgtccgcacccgcacctactaccctcag
cttggcctgatccagctgttcgacgatcaccagctggtgctgattgacccgctgaatatc
cgtgactggtcaccctttattgcgctgctgaccgacacccgcgtgactaaatttctgcat
gccggaggggaagatctggaagtcttcctgcaccgtttcggcgtgctgccgacgcctatg
attgacactcagattctggcagccttctccggccagccactttcctggggctttgcttcc
atggtggcgcattttacccaggtcgagctggataaaagtgaatcccgtaccgactggctg
gcgcgccctctgacccagcgtcagtgcgagtatgcggcggcggacgttcactatctgctg
ccgattgcccgtcagttgatgatcaacacggaagaggctggcaacatggcggcggcactc
agtgagtgcgataacctctgtcagcgccgtctcgacagcgtggcaccggatgaagcctgg
cgggatatcaccaatgcctggcaactgcgtccgcgtcagctggcggcactgcagcggctg
gcggcctggcgtctgaaactggcgcgtgaaaaagatatggcggtgaattttgtggtgcgc
gaagagcatctgtggaaagtggcgcgctttatgcctggctctctgggggagctggatcat
ctggggctgtcaggccacgaaatccgtttccacggcaaaacgctggtggcgctggtggcc
gaagcggaggcgcttgacgagaatgaactgccggcaccgctgggcaatctgatcgaccat
ccgcactataagcaggtgtttaaggcgatgaaggcgctggtgcagcaggtcagtgagcag
agcggattcagtcaggagttactggcgtcacgacgtcagattaatcaggtattaagccag
cactggggcctgaagccacagggacgtcagccggaattactcaccggatggcggggcgaa
ctgctgaaacccggcattgaggagattcttgcgggttgttaa
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