Pantoea alfalfae: K6R05_11660
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Entry
K6R05_11660 CDS
T09440
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
palf
Pantoea alfalfae
Pathway
palf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6R05_11660 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palf03019
]
K6R05_11660 (rne)
03009 Ribosome biogenesis [BR:
palf03009
]
K6R05_11660 (rne)
Enzymes [BR:
palf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K6R05_11660 (rne)
Messenger RNA biogenesis [BR:
palf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K6R05_11660 (rne)
Ribosome biogenesis [BR:
palf03009
]
Prokaryotic type
rRNA processing factors
K6R05_11660 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QZX94433
LinkDB
All DBs
Position
2498083..2501511
Genome browser
AA seq
1142 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDLPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVEPEVKRAEAQPAAKSAPAVAAPATVSTGFFGRLLGGLKKMFAGEEAPAAAPVATEV
AETQKATEEQESNSGRGERRSNNNNRRNNNRRERTPRNGDNAQSREGREPRESREPRESR
EPRESREPRESREPRDGNDNRRNKRQSQTGEVREERPALSEEARQQRDEQQQQRREQRAE
RQRRRQEEKRAGEEAAKAAEQPAVVAEALSVTEAQDDERVQVMPRRKPRQLNQKVRVDDN
RQPLPAEASDIAPPAEGRQAQPADVAQTQPDFQASQSDEQDDNDNRDNANMPRRSRRSPR
HLRVSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWIRYPVSQASEEQVQNVMHET
PAYNSEETADVTHALPVAAAVESVAQDAPVQQAEPQAETPVAIVNTDDTRAIDAPVDEQP
SVVPAADEAKAEAVAAEAVPAEPVAETPVSQPADLVTETAVVTPAAEVSQPADVAEQSAT
DVSEEIAAEVEEVLNAPVAANAESAPVSEPHAPVAARDIAPAAPVTAVEPGASAPAAEAV
PNDGTRWKHYASAPMTKAPAPVWQSEPAPHSDWVRAPYEFDGRGSAGGHSATHQATAPAT
KP
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcagcgtctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcactcgcattgaacccagccttgaagctgcgtttgtcgattac
ggcgcagagcgtcacggtttcctcccgttaaaagaaatttcccgcgaatatttcccctcc
agctacaacgcacatggtcgtccgaatattaaagacgtgctgcgtgaaggccaggaagtc
attgttcagatcgataaagaagaacgcggcaataaaggcgctgcactgacgacctttatc
tctctggcgggcagctacctggtactgatgccgaataacccacgtgcaggcggtatctct
cgccgcatcgaaggtgacgatcgtaccgaactgaaagaagcgctgtcggcgctggatctg
ccggaaggcatgggcctgattgtgcgtactgccggcgtcggtaaatctgccgagtcgctg
cagtgggacttaagcttccgtctcaagcactgggaagcgattaagaaagctgctgaaaat
cgccctgctccgttcctgatccatcaggagagcaacgtgattgtgcgtgccttccgcgac
tatctgcgtcaggacatcggtgaaatccttatcgataatccgaaagtgctggaactggcg
cgtcagcatatcgcggcgctgggtcgtccggacttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactaccagatcgaatcgcaaatcgaatccgctttccag
cgtgaagtccgcctgccttccggtggatcgattgtgatcgacagtaccgaagcactgacc
gctatcgatatcaactcagcacgcgccacgcgcggcggtgacattgaagagactgcgttc
aacaccaaccttgaagcggccgatgagattgcccgtcagctgcgcctgcgtgacctgggc
ggcctgatcgttatcgattatatcgatatgacgccggtacgccatcagcgcgctgttgaa
aaccgtctgcgtgaagctgtccgccaggaccgcgcccgcattcagatcagccacatttca
cgtttcggcctgctggagatgtcccgtcagcgtctgagcccgtcattaggtgaatccagt
catcatgtctgcccacgctgtagcggtaccggcactatccgtgataacgagtcactggcg
ctgtccattctgcgtctgatcgaagaagaagcgctgaaagacaacaccaaagaagttcac
gccattgttccggttcaggttgcgtcttacctgctgaatgaaaaacgtgaagcggtcaac
gcgattgaaaaacgccagggcggcgtgcgggcaatcattgttcctgatgacaagatgcag
accccgcactactccgtgctgcgcgtacgtaaaggcgaagagacgcagaccctgagttat
catctgccgaagctgcatgaagccgaaatggccatgccgtcggaagaggaacatgctgag
cgccgtcgtcctgagcagcctgctctggccgcctttgtgatgcctgatgcgcctcctgcg
ccggtagaagttgagccagaagtgaagcgcgctgaagctcagccagcagcaaaatcagcc
ccggctgtcgctgcacccgcgaccgtcagcaccggtttcttcgggcgtctgcttggcggc
ctgaaaaaaatgttcgctggcgaagaagcgcctgctgctgcgccagtggccactgaggtt
gctgaaacgcagaaagcaactgaagagcaggaaagcaacagtggccgtggcgagcgccgc
agcaacaataacaaccgtcgtaacaacaatcgtcgtgagcgtacgccgcgtaacggtgat
aatgcacagtctcgtgaaggccgtgaaccacgcgaaagtcgcgagccgcgtgaaagccgt
gaaccgcgcgaaagtcgtgagccacgtgaaagccgcgagccgcgcgatggcaacgataac
cgtcgcaacaagcgtcagtctcagacgggtgaagtacgcgaagagcgtccggcactgagc
gaagaagcgcgccagcagcgtgacgagcagcagcaacagcgccgtgaacagcgtgctgaa
cgtcagcgtcgtcgtcaggaagagaaacgtgccggtgaagaagcggccaaagcggctgag
cagccagcagtcgttgctgaagccctgagcgtcactgaggcgcaggatgatgaacgcgtt
caggttatgccgcgtcgtaagccgcgtcagctgaaccagaaggtgcgtgttgatgataac
cgtcagcctctgccagccgaagccagcgacatcgctccgcctgctgaagggcgtcaggca
cagccagctgacgttgctcagacacagcctgatttccaggcttcgcagagtgacgagcag
gatgataacgataaccgtgataacgccaatatgccgcgtcgttcacgtcgttcgccacgt
catctgcgcgtcagcggacagcgtcgtcgtcgttaccgtgatgagcgttacccgacgcag
tcagcaatgccgctggctgctgccgctgcttcacctgaaatggcatccggtaaagtctgg
attcgctatccggtgagccaggccagcgaagagcaggttcagaatgtaatgcacgagacg
ccagcttataacagcgaagagactgcagacgtgacccatgcgctgccggttgctgccgcc
gttgaatcggttgctcaggacgcgccagtgcaacaggccgagccgcaggcagaaacgcca
gtagcgatcgtcaacactgacgatacccgtgctatcgacgccccggttgacgagcagcct
tctgttgttccggctgctgatgaagccaaagcggaagcggtagcggctgaagctgtgcct
gctgagcccgtcgctgaaacgccagtgtcacagcctgctgacctggtcaccgaaacagcg
gtggtaacgccagccgctgaagtttcacagcctgcagacgttgcagagcagtcagctact
gatgtcagtgaagagatcgccgcagaggtggaagaagtgctgaacgcgccggttgctgct
aacgctgaaagcgcgccagtcagtgaacctcatgccccggttgccgctcgcgatatcgcg
cctgcagcaccggtaacggcggtcgagcctggtgcatcagcgcctgctgctgaagcggtg
ccaaatgacggtacgcgctggaagcactatgcctctgcaccgatgaccaaagcgcctgcg
ccggtctggcagtcagagcctgctccgcacagtgactgggtacgggcaccttatgagttc
gatggtcgcggttctgcgggtggtcatagcgccacacatcaggccactgccccggcgaca
aagccgtaa
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