Pantoea alfalfae: K6R05_13220
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Entry
K6R05_13220 CDS
T09440
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
palf
Pantoea alfalfae
Pathway
palf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6R05_13220 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_13220 (uvrB)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6R05_13220 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K6R05_13220 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
SBDS_domain_II
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
QZX94722
LinkDB
All DBs
Position
complement(2818193..2820214)
Genome browser
AA seq
673 aa
AA seq
DB search
MTKAFKLNSAFKPSGDQPEAIRRLEDGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPR
FTIYPKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSEL
GYCSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLD
PIIEVRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITPSMARAIEETERRREKQQLHNEQNGIVPQGLNKKITDILELG
NNVVKTRGKAKPARPGEAQALADLQLLTPQALQKKIHELEGQMQQHAQNLEFEQAASVRD
QLHELRTLFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagcttttaaactcaattccgcctttaaaccttcgggcgaccagcctgaggcg
atccgtcgcctggaagatgggctggaggatggactggcccatcagaccttattaggcgtg
accggctcaggtaaaacgtttaccgtcgccaacgtcattgccgaccttaaccgcccgacg
atggtgctggcaccgaacaagacgctggcggctcagctctatggcgagatgaaagagttt
ttcccggataacgccgtcgagtttttcgtctcttactacgactactatcagcctgaagcc
tatgtgccgagctccgatacctttatcgaaaaggatgcatcggttaacgaacacatcgaa
cagatgcgtctgtcggccaccaaggcgctgcttgaacggcgcgacgttatcgtggtggcg
tcggtttcggcgatctacggtctgggcgatcccgatctctatctcaaaatgatgttgcac
ctgacccgcggcatgattatcgatcagcgcagcattctgcgccgcctgtcagagctgcaa
tacacccgtaacgaccaggcgttccagcgcggcactttccgcgtgcgtggcgaagtgatc
gatatcttcccggcagagtcggacgatatcgcgctgcgcgtcgaactgtttgacgaagag
gtcgagcgtctgtcgctgtttgacccgctgaccggtcagatcgattcagtagtgccgcgc
tttaccatctatcccaagacgcactacgtgacgccgcgtgagcgtattctgcaggcgatg
gaagatatcaaagtcgagctggccgaccgtcgccgggtattgctggagaacaataagctg
ctggaagagcagcgtattacccagcgtacccagtttgaccttgagatgatgagtgagctg
ggttactgctccggtatcgaaaactactcgcgctacctctccgcacgcggaccgggcgaa
gcgccgccgacgctgtttgactatctgcccgccgatggcctgctggtggtggatgagtcg
catgtgaccatcccgcagattggcggcatgtacaaaggcgaccgggcgcgtaaagagacg
ctggtggagtatggcttccgcctgccgtcggcgctggacaaccgtccgatgaagtttgaa
gagtttgaggcgctggccccgcagaccatctatgtctcggcaacgccgggcaaatatgag
ctggaaaaatcgggcgatgaagtggttgaccaggtggtacgtcctaccggcctgctggac
ccgatcatcgaagtgcgtccggtcgggacgcaggttgacgatctgctgtccgagatccgt
cagcgcgtggcgatcaacgaacgtgtgctggtgacggtgctgaccaagcgcatggcggaa
gatcttaccgagtatctcacggagcatggcgagaaagtgcgctatctgcactccgacatt
gacaccgtagagcgtatggagattatccgcgacttacgtctgggtgagtttgatgtactg
gtaggcatcaacttactgcgtgaggggctggatatgccggaagtgtcgctggtggcgatt
ctggatgcggataaagagggcttcctgcgttccgaacgatcgctgattcagaccattggt
cgtgcggcgcgtaacatcaacggcaaggcgattctttatggcgataaaatcacgccgtca
atggcgcgcgccattgaagagacggagcgccgccgtgagaagcagcagctgcacaacgag
cagaacggcattgtgccgcagggcctgaataagaagatcaccgatattctggaactgggc
aacaacgtggtgaaaacccgtggtaaagcgaaacccgcccgacctggcgaagctcaggca
ctggccgatttgcaactgctaacgccgcaggcgctgcagaagaagatccacgagctggaa
gggcagatgcagcagcacgcgcagaacctggagttcgaacaggcagccagcgtgcgcgat
cagctgcatgagctgcgaacgctgtttattgcggcctcgtag
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