Pantoea alfalfae: K6R05_13360
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Entry
K6R05_13360 CDS
T09440
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
palf
Pantoea alfalfae
Pathway
palf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K6R05_13360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
palf03000
]
K6R05_13360
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_13360
Enzymes [BR:
palf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
K6R05_13360
Transcription factors [BR:
palf03000
]
Prokaryotic type
Helix-turn-helix
AraC family
K6R05_13360
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K6R05_13360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HTH_23
GntR
Motif
Other DBs
NCBI-ProteinID:
QZX94750
LinkDB
All DBs
Position
2848706..2850181
Genome browser
AA seq
491 aa
AA seq
DB search
MIDPDIAYQALTSRDTRFDGVFFVGVTSTGIYCRPICPVKAPMQKNCLFFSSAEAAEKAR
FRPCLRCRPELAPGNAPVDQPHRVAERLIQRIEEGMLEEREGLEAIAAEFGLSLRQLRRI
VQLELGVSPMELKQTRRMLLAKQLLTETQLPVTEVAYASGFSSLRRFNDVFQARYRMTPS
ALRRDDTGTQRAQPGDRVTLRLAYRPPYDWAAMLWFLQTHLMKEVEAVEDGSWRRTVALG
RCRGWVSVSHLPQKNALQVTLSTSLTPVLPLLLRRLRDLFDLDAQPQRIATCLAQDPLLA
PSLIAHPGLRVPGAFDAFELGVRAIIGQQVTVKAATTVSSRFAAAFGEPCETPFADLTRY
TALPERIAGLTVDDVAPMGIVSAARSRAIIAFASACASGDLRLSAAQQPDEVIKKLVSLP
GIGPWTAHYIAMRALRWPDAFPKEDIAIRNNLGGLSSKEAEARSQSWRPWRSYAVMHIWE
SLAVAKVKKKA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatcccgacattgcttatcaggcgctgacctctcgtgatacccgctttgacggc
gttttctttgtgggcgtgacgtcaaccggtatctattgccgtccgatctgcccggtcaaa
gcacccatgcagaaaaattgccttttcttcagcagcgccgaggcagcggaaaaagcgcgc
ttccgtccctgcctgcgctgccggccagaactggcacccggcaatgcgcccgttgatcag
ccgcatcgtgtggcggagcggctgattcagcgcattgaggaaggcatgctggaggagcgc
gaaggtctggaagcgattgccgctgaattcggccttagcctgcgtcagctgcgccgtatc
gtgcagcttgaactcggcgtctcgccgatggagctgaagcagacgcggcgtatgctgctg
gcaaaacagctgctgaccgaaacacaactgccggttacagaagtcgcctacgccagcggt
ttcagcagcctgcgtcgctttaatgatgtgttccaggcgcgctaccgcatgacgccgagc
gcgctgcgtcgggacgatacgggcactcaacgtgcgcagcccggcgaccgcgtgacgctg
cggctggcctatcgcccaccctacgactgggcagcgatgctctggtttttgcagacgcac
ctgatgaaggaggtcgaagcagtggaagatggcagctggcgacgcaccgtggcgctgggt
cgctgccggggttgggtcagcgtttcccatctgccgcagaagaacgcattgcaggtgacg
ctctcaacgtccctgacgccagtgctgcctctgctgctgcgccgtctgcgtgacctgttc
gatcttgacgcgcagccgcagcgtatcgccacctgcctggcccaggatccgctgctggcg
cccagcctgatcgcgcatccgggtctgcgcgtgcctggcgcgtttgacgcttttgagctg
ggcgtgcgcgccattatcggccagcaggtaacggtcaaagcagccaccacggtcagcagc
cgctttgccgccgccttcggtgagccctgcgagacgccttttgccgatctcacccgttat
accgcgcttcctgaacgtatcgccgggctgacggtggacgatgttgcaccgatgggcatt
gtcagcgccgcgcgctcccgcgccatcatcgcctttgccagcgcctgcgccagcggtgac
ctgcgtcttagcgccgctcagcagcctgacgaggtgataaaaaagctggtcagcctgccg
ggcattggcccctggacagcgcattatatcgcgatgcgcgccctgcgctggccggatgct
tttcccaaagaggatatcgccatccgtaacaacctgggcggcctgtcatccaaagaagcg
gaagcgcgctcgcaatcctggcgtccctggcgcagctatgcggtgatgcatatctgggag
agcctggcggtggcaaaggtgaagaaaaaggcgtga
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