Pantoea alfalfae: K6R05_15100
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Entry
K6R05_15100 CDS
T09440
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
palf
Pantoea alfalfae
Pathway
palf03030
DNA replication
palf03430
Mismatch repair
palf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6R05_15100 (dnaE)
03430 Mismatch repair
K6R05_15100 (dnaE)
03440 Homologous recombination
K6R05_15100 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palf03032
]
K6R05_15100 (dnaE)
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_15100 (dnaE)
Enzymes [BR:
palf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K6R05_15100 (dnaE)
DNA replication proteins [BR:
palf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K6R05_15100 (dnaE)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K6R05_15100 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QZX95060
LinkDB
All DBs
Position
complement(3186704..3190186)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSA
GIKPVIGADFNVASELMGDELTQLTVLASSNTGYQNLTLLISRAYQRGYGVDGPIIDRDW
LIELQEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIRTGRQDEES
YLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYM
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVVKSREGL
EERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFIAEPQ
LPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEHGQFPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKEGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVNEAGEIVYGIGAIKG
VGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALMS
ALSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPEQVQLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFGAAWRISPSD
RLLNDLRSLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccccgttttatacatctccgtgtccacagtgactattcgatggttgatggc
ctggcgaaaaccgggccattgatcaagaaggcagctgcccttggcatgcctgctatcgca
attaccgacttcactaacctttgtggtctggtgaaattttacggtggcgcacacagcgca
gggataaagccggtcattggtgccgatttcaacgttgccagcgagttgatgggggatgag
ctgacccaacttaccgtgctggcttcaagtaataccggctatcagaatctgacgctgctg
atctcccgcgcctatcagcgtggttatggcgtggatggaccgatcatcgatcgcgactgg
ctgattgagttgcaggaagggttaatcctgctgtcgggcggacggcgtggcgatgtgggc
cgcagcctgctgcgtggcaataacgccctggtgtcgcagtgtctgtcgttttaccagcag
catttccctgatcgctactatctggagctgatccgcaccggtcgtcaggacgaagagagc
tatctgcatgccgccgttgagctggccattgccgagggcatcccggtcgtcgccaccaat
gaagtctgctttatcaacgcagaagatttcgacgcgcacgaaattcgcgttgcgattcac
gacggctatacgctggatgatcccaagcgtccgcgcaactacagtcctcagcaatatatg
cgcagcgaagaagagatgtgcgagctgttctcggacatcccggaagcgctggaaaacagc
gtagagattgctaagcgttgtaacgtcacggtccggctcggcgagtacttcctgccgcag
ttcccgaccggcgacatgaccactgaagattatctggtggtgaaatcccgtgagggactg
gaagagcgtctggtgttcctgttcccggacgaggctgagcgcgcggaaaaacgcccggaa
tatgatgagcgtttggaaattgaactcaacgttatcaaccagatgggattcccgggctac
ttcctgatcgtaatggagttcatccagtggtccaaggataacggtgtgccggtcggaccg
gggcgtggttcgggtgcgggttcgctggtggcctatgcgttgaaaatcaccgatatcgat
ccgctggaatttgacctgctgttcgaacgcttcctgaaccctgaacgtgtctcaatgccc
gacttcgacgtcgacttctgcatggagaagcgcgatcaggtgatcgaacatgtcgccgat
atgtacggacgtgaagcggtttcacagatcattaccttcggcaccatggcagcgaaagcg
gttatccgcgatgtgggccgcgtgctgggtcatccttacggcttcgttgaccgtatttca
aaactgatcccgcccgatcccggcatgacgctggaaaaagcgtttattgctgaaccacaa
cttcctgcgatgtatgacgcagatgaagaggtgaaagcgctcatcgacatggcgcgcaag
ctggaaggggtgacgcgtaacgccggtaagcatgcgggtggcgtggtcattgcgccaacg
aagatcaccgattttgcgccgctctattgcgatgagcacggccagttcccggtcacccag
ttcgataaaaatgatgtggaatatgccggactggtgaagttcgacttcctggggctgcgt
acgctgaccatcatcgactgggcgctgaagatgatcaatccgcgccgggaaaaagaggga
ctggagccgatcgatatcgccgcgatcccactggatgataagaaaagcttcgatatgctg
cagcgctcggaaaccaccgcagtgttccagcttgaatcgcgcggcatgaaagatctgatt
aagcgtcttaagcccgactgcttcgaagatatgatcgcactggtggcgctgttccgtcct
ggtcctctgcagtccggcatggtagacaacttcattgaccgtaagcatggccgggaagcg
atctcctatcccgacatccagtggcagcatgaaagcctgaagccagtactggagccaacg
tacggcatcatcctctatcaggaacaggtgatgcagatcgcccaggtcctgtccggttac
accctgggcggtgcagatatgctgcgtcgcgccatgggtaaaaagaaacctgaggagatg
gccaaacagcgttcagtcttccgcgacggtgccgaaagcatgggcatcgacggcgaactg
tcgatgaagatcttcgatctggtggaaaaatttgcagggtatggctttaacaagtcacac
tctgcggcctacgcactggtctcctatcagacgctgtggctgaaagcgcactatccggct
gagtttatggcggcggttatgaccgccgatatggataacaccgagaaagtagtcggcctg
gtcgatgagtgctggcggatggggttgaaagtcctgccgcccgatattaactccggtctc
tatccgttccatgttaacgaagcgggcgagatcgtgtacggcataggcgcgatcaaaggc
gtgggcgaaggtccgatcgaagcgatcatcgacgcccgtaacgaaggcggctatttccgc
gagctgtttgatctctgcgcccgtaccgataccaaaaagatcaaccgtcgggtgatggag
aaactgattatgtccggggcctttgatcgcctcggaccgcatcgcgcggcgctgatgagt
gcactcagcgacgcgctgaaagcggccgatcaacacgcgaaagcggaagcgattggtcag
gcagatatgtttggcgtactggcagaagagccggagcaggttgagaaatcgtacgccagc
gtcacaccctggcctgagcaggtgcagctggatggtgaacgggaaacgctgggcttgtac
ctgaccggccacccgattaatcagtatctgaaagaaattgagcgttacgttggcggggtg
cggctgaaagatatgcatcctaccgatcggggtaaaattaccgtggcggccggtctggtg
atcgccgcgcgggtaatggtgaccaaacgcggcaaccgaattggtatctgtactctggac
gatcgctccggtcgtcttgaggtgatgttatttaccgatgcgttagataaataccagcag
ttgctggagaaagaccgaatcctgatcgtcagcggacaggtcagctttgatgacttcagt
ggtgggcttaaaatgaccgcgcgtgaagtcatggacatcgacgaagctcgcgaaaaatac
gcgcgcggacttgctatctcgctgacggacaggcaaattgatgaccagctattaaaccga
ctccgtcagtccctggaaccccatcgatcagggactattccggtgcatctctactatcag
agagccgacgcgcgagcgaagctgcgctttggtgcagcgtggcgaatttcgcccagcgat
cgtttacttaacgatctgcgctcgttgattggatcggagcaggtggaactggagtttgac
tag
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integrated database retrieval system
