Pantoea alfalfae: K6R05_15265
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Entry
K6R05_15265 CDS
T09440
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
palf
Pantoea alfalfae
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palf03019
]
K6R05_15265 (hrpB)
Enzymes [BR:
palf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K6R05_15265 (hrpB)
Messenger RNA biogenesis [BR:
palf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K6R05_15265 (hrpB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
WHD_HA2
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
QZX95091
LinkDB
All DBs
Position
complement(3228049..3230532)
Genome browser
AA seq
827 aa
AA seq
DB search
MRAILAQAEAEFAVSDLPVSAVLPDILAALRDASQILLAAPTGAGKSTWLPLQLLQQAAL
PGRIIMLEPRRLAARNVAQRLAEQLGEQPGATVGFRMRGESCVGPETRLEVVTEGMLTRM
LQHDPMLEGVSLVILDEFHERSLQADLALALLLDVQQGLRDDLKIMLMSATLDNARLAAL
LPDAPLIISEGRSYPVERRYASLNQNVRFEEAVAREVAQLLRDEDGSLLLFLPGVAEIER
VKRELESRISDDVDLTPLYGALPLAAQRRAILPAAAGRRKVVLATNIAETSLTIEGIRLV
VDSALERSALFDARSGVTRLQTQRISQASMIQRAGRAGRLMPGICLHLLPQEQASRAAAQ
SEPEMVNSDLSSLWLDLLQWGCTGPQQLQWLDQPPARNLMAAQQQLTRLGALDSNGLLNT
LGRRMAKLGCDPRLAAMLCAAGDEPDAVASAALLVAILEDPPRSGSADLRDALHRPQAQW
QRRAQQWQQRLKIRGGRGDEDRFAGLLAVGFGDRLARRRDQSGRYQLANGLGARLDEQDG
LTRNEWLITPALLQGSATPDARMLLALPVDIETLCQHQPALIERRTEVEWDEEKGTLRAF
RREQIGALILKTQPMARPEPDVLHAAMLRWIAEKGLSVLGWTPDAGQLRLRIQCAAQWLP
EESWPAMDDESLLESLPQWLLPQMSAVRDLRSLQAVNLTTALLHLLTWSQRQRLDTVLPT
HYTVPTGSRLPIRYDADKPPALAVRIQEMFGEAQNPTVAEGRIPLVLELLSPAQRPLQIT
RDLAAFWRGAWPEVRKEMKGRYPKHLWPEDPATALPTRRTKKMSPQG
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatcttagcacaggcagaagcggagtttgctgtgagcgatttaccggtcagc
gcggtgctgcctgacatcctggcggcgctgcgtgacgcctctcaaatcctgctggccgcc
cctaccggcgcgggcaaatcgacctggctgccgctgcagttgttgcagcaggcggcgttg
ccgggacgcatcattatgctggagccacgccggctggcggcacgtaatgtggcgcagcgg
ctggcagaacagctcggcgaacagccgggagccacagtgggattccggatgcgtggcgaa
agctgcgtcgggccagaaacccggctggaagtggtcaccgaagggatgctcacgcgcatg
cttcagcacgatccgatgctggagggcgtatcgctggtgatcctcgatgaatttcacgag
cgcagcctgcaggccgacctggcgctggcgctgctgctcgatgtgcagcaggggctgcgc
gacgatcttaaaatcatgctgatgtcggccacgctggataatgcccggctggcggcgctg
ctgccggatgcgccactgattatttcagaagggcgcagctatccggttgaacggcgttac
gcgtcgctgaatcagaacgtacgctttgaagaggcggtcgcgcgtgaagtcgcccagctg
ctgcgcgacgaagacggctccctgctgctgtttctgccgggcgtggcggaaattgaacgc
gtgaaacgcgagctggaatcacgcattagtgacgatgtggatctgacaccgctctatggc
gcactgccgctggcggcgcagcgacgggcgatcctgcccgccgccgccggacgtcgcaaa
gtggtgctcgccaccaatatcgccgagaccagcctgaccattgaagggattcgtctggta
gtcgacagtgcgctggaacgcagcgccctgtttgacgcccgcagcggcgtaacgcgtctg
cagacgcagcgcatcagccaggcatcaatgatccagcgcgcaggtcgcgccgggcgactg
atgccggggatctgtctgcatcttctgccgcaggagcaggcgtctcgtgcggcggcgcag
agcgaaccggaaatggttaacagtgacctttcgtcgctgtggctggacctgttgcagtgg
ggctgtaccgggccgcaacagctgcagtggctggatcagccgcccgccagaaatctgatg
gcagcgcaacaacagctgacccgtctgggtgcactggacagcaacggcctgcttaacacg
ctgggacggcgtatggcaaagctgggttgcgatccgcggcttgctgctatgctctgtgcc
gcaggcgatgagccggatgcggtcgccagcgccgcactgctggtggcgattctggaagat
cctccgcgcagcggcagtgccgatctgcgtgatgcgctgcatcggccacaggcccaatgg
cagcggcgggcgcagcagtggcagcagcggcttaaaattcggggcggacggggcgatgaa
gatcgcttcgctggcctgctggcggtagggtttggcgatcggctggcgcggcgtcgcgac
cagagcggtcgctatcagctggctaacgggctgggggccagactcgatgagcaggatggc
ctgacgcgcaacgaatggctgattacacccgccctgttgcagggcagtgcgacgccggat
gcccggatgttgctggcactgccggtcgatattgaaacgctatgccagcatcagccagcg
ctgattgagcgtcggaccgaagtggagtgggatgaagagaagggcacgctgcgtgcgttc
agacgtgagcagattggcgccctgatcctgaagacccagccgatggcgcgcccggagccg
gacgtgcttcacgcggctatgctgcgctggatcgccgaaaaaggtctgtcggtattgggc
tggacgccggatgccgggcagttgcgcctgcgcattcagtgtgcggcgcagtggctgccg
gaagagagctggcccgccatggatgacgaaagcctgcttgagagcctgccgcagtggctg
ttgccgcagatgtcagcagtgcgcgatctgcgcagcctgcaggcggtgaacctgaccacg
gcgctcttacatttactcacatggtcacaacgtcagcggctggatactgtgctgccaact
cattacactgtgccgaccggaagccggctgccaatccgctacgatgcggataagccgccc
gcgctggcagtcaggattcaggagatgtttggcgaagcgcagaatcccaccgtggcggaa
ggacgcatcccgctggtgctcgagctgttatcgcccgcccagcgtccgttgcagatcacc
cgcgatctggcggcgttctggcgcggtgcctggccggaggtcaggaaagagatgaaggga
cgctatccgaaacacctctggccagaggatccggccaccgccttgccaacaaggcgaacc
aaaaaaatgtccccgcagggttga
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