Pantoea alfalfae: K6R05_16520
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Entry
K6R05_16520 CDS
T09440
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palf
Pantoea alfalfae
Pathway
palf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6R05_16520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palf03019
]
K6R05_16520
03009 Ribosome biogenesis [BR:
palf03009
]
K6R05_16520
Enzymes [BR:
palf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6R05_16520
Messenger RNA biogenesis [BR:
palf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6R05_16520
Ribosome biogenesis [BR:
palf03009
]
Prokaryotic type
rRNA helicases
K6R05_16520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_C
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QZX95322
LinkDB
All DBs
Position
complement(3532887..3534809)
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AA seq
640 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPTVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLTKMQPEDELDLETL
AAALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARSDRGPRESRDSRDGDR
PRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGNHSTIELPK
GMPGDVLQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGAGGERRSGPGAANREGGRR
FSSERREGGREGGGRTFNREGSRGPRREEGAAAAPRRRDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgaccttggcctgaacgccgacatccttgaatca
ctgaatggcatgggctacgtaaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtgttaggcatggcgcagaccgggagtggtaaaactgcggcattt
tctctgccgctgttaaacaacatcgacccgactgttaaagcaccgcaaatcctggtgctg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatcaccgaattctctaagcac
atgcgtggcctgaacgtggttgccctttacggcggccagcgttatgacgtgcagctgcgc
gctctgcgtcagggaccacaggttgttgtgggtacccctggtcgtctgcttgaccacctg
aaacgcggcacgttagaactctctaacctgcgcggcctggtgctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggctcagattccagccggt
catcagactgcactgttctctgcaaccatgccggaagcgattcgtcgcatcaccaaacgc
ttcatgaaagatccacaggaagtgcgtatccagtcaagtatgacaacgcgtcctgatatc
agccagagctactggaccgcttacggtcgtaaaacagatgcactggttcgcttcctggaa
gcagaagactttgatgctgccatcatcttcgtgcgtactaaaaacgcaacgctggaagtg
gcagaagcactggagcgtagtggctacaacagcgccgcgctgaacggtgatatgaaccag
gctctgcgtgagcagacgctggagcgcctgaaagatggtcgtctcgacatcctgattgca
accgacgttgcggcccgtggcctggacgttgagcgtatcagcctggttgtgaactacgac
atcccgatggatgcagaatcttacgttcaccgtatcggtcgtaccggtcgtgctggtcgt
gctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaa
cgtacgatgaagctgactatccctgaagttgaactgcctaacgcagaactgctgggtgag
cgtcgtctggccaagtttgccgctaaagttcagcagcagctggaaagcagcgatctggat
cagtaccgtgctctgctgactaaaatgcagccggaagatgaactggatctggaaacgctg
gccgccgcactgcttaagatggcacagggcgaacgtcctctgattctgccaccagaagca
ccacgtcctgcacgtcgtgaataccgcgatcgtgacgagcgtgatggccgtcgtgacagc
cgtgaagcgcgtagcgatcgtggcccacgtgaaagccgtgacagccgtgatggcgatcgt
ccacgtcgcgaacgtcgtgacgttggcgaaatgcagctgtaccgcatcgaagtaggccgt
gatgatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgacatcagc
agccgttacatcggtaacatcaagctgttcggtaaccactcgactatcgagctgccgaaa
ggcatgccaggcgatgtgctgcagcacttcacccgtacgcgtattctgaacaaaccaatg
aatatgcagctgctgggtgatgctcagccaaacgaaggccgtggcgatcgtcgtccagcc
ggtgctggcggtgagcgtcgcagcggtccgggcgcagctaaccgtgaaggtggtcgtcgc
ttctcttctgaacgccgtgaaggtggtcgtgaaggcggtggacgtactttcaaccgtgaa
ggtagccgtggtccacgtcgtgaagaaggcgcagctgccgctccacgtcgtcgtgatgca
taa
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