Pantoea alfalfae: K6R05_17605
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Entry
K6R05_17605 CDS
T09440
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
palf
Pantoea alfalfae
Pathway
palf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6R05_17605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palf03021
]
K6R05_17605 (rpoC)
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_17605 (rpoC)
Enzymes [BR:
palf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6R05_17605 (rpoC)
Transcription machinery [BR:
palf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6R05_17605 (rpoC)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6R05_17605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QZX95522
LinkDB
All DBs
Position
complement(3770966..3775189)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHEKNEQDEWVAKTSIIDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEVVINRDGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLDEHWCDVLELNSVDSLKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMVDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIVSAGSADFLEGEQAEFSRIKISNRDLEANGKVGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKEKVIVGRLIPAGTGYAYHQDRMRRKAAGEVPV
APQVTADEASASLAELLNAGLGGNKDD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgccatc
aaaattgcgctggcttcgccagacatgatccgttcctggtcttttggtgaagtgaaaaag
ccagaaaccattaactaccgtacttttaagccagagcgcgatggtctgttctgtgcccgt
atcttcgggccggtaaaggactatgagtgcctgtgtggcaagtacaagcgcctcaaacac
cgtggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcgtcgccgactgcgcacatctggttcctgaagtcactg
ccatcgcgtatcggcttactgctggatatgccactgcgtgacatcgagcgcgtgctctac
tttgaatcttacgtggtaatcgaaggtggcatgaccaacctcgagaagcgtcagatcctg
actgaagagcagtaccttgacgctctggaagagttcggtgacgagttcgacgccaaaatg
ggcgccgaagcaatccaggccctgttgaaaaacatggatctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaaacgtaaaaaactgactaagcgc
atcaagctgctggaagcgttcgtccagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgttctgccaccggacctgcgtccgctggtaccgctggatggtggtcgtttc
gccacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctggctgcgccagatatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcggtcgatgcactgctggacaacggtcgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactattctggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactcgaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagccgttgtctgggatatcctcgacgaagtgatccgtgagcacccg
gttctgctgaaccgtgcgcctacgctgcaccgtctgggtattcaggcctttgaaccggtt
ctgattgaaggtaaagcgatccagctgcacccgctggtttgtgcggcttataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgccggc
ctcgcctctctgcatgctcgcgttaaggtgcgtatcaccgaacacgagaagaatgagcag
gatgagtgggttgctaaaaccagcatcatcgatactacgattggccgtgccatcctgtgg
atgatcgtgccaaaaggtctgcctttctccatcgttaaccaggcgctgggcaaaaaagct
atctccaaaatgcttaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggtttcgcttacgctgcccgttcaggcgcgtcagtcggt
atcgacgacatggttattccagagaagaaagtggaaatcatcaccgaagcggaagcagaa
gtggctgagatccaggagcagttccagtctggtctggtaaccgcaggcgaacgttataac
aaagtcatcgatatctgggccgcagccaacgaacgtgttgccaaggcgatgatggaaaac
ctctctaccgaagtcgtgattaaccgcgacggcgaagaagagcgtcaggtttcctttaac
agcatctttatgatggctgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacaccaatcacg
gcgaacttccgtgaagggttgaacgtactccagtacttcatctcaacccacggtgcacgt
aaaggcctggcggataccgcactgaaaacagcgaactccggttatctgacgcgtcgtctg
gttgacgttgcccaggatctggtagttaccgaagatgactgtggtacacacgaaggcatc
atgatgacgcctgtcattgaaggtggcgacgttaaagagccactgcgtgaacgtgtactg
ggccgtgtgactgctgaagacgttctgaagccgggtactgctgatattctggtcccacgc
aacacgctgctcgatgagcactggtgtgacgtgctggaactgaactcagtcgacagcctg
aaagtccgctcggtggtaggttgtgaaaccgattttggtgtgtgcgcgcattgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttatcgcggca
cagtccatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcacgtgcggctgctgaatccagcattcaggtgaagaacaaaggtaccatcaagctg
accaacgccaagtcggtaacgaactcggcaggcaagctggtgatcacctcgcgtaacgtt
gaactgaaaatgatcgacgaatttggtcgtaccaaagagagctataaagttccttacggt
tctaccatggcgaaaggtgatggtgagcaggttgcagcgggcgaaaccgtcgcaaactgg
gatccgcataccatgccagttatcaccgaagtgggcggtttcattcgcttcacggatatg
gttgatggccagacgattacccgtcagacagatgatttaaccggtctgtcttcactggtg
gttctggacagtgctgaacgtactgcaggcggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggcaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgttaagatcagtgccggtgacacg
ttagcgcgtgttccacaggaatctggcggtaccaaggatattaccggtggtctgccacgc
gttgctgatctgttcgaagcgcgtcgtccgaaagagccagctattctggcggagatcagc
ggcatcatctccttcggtaaagagaccaaaggtaagcgtcgtctggtcattactccgctg
gatggcagtgagccatacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgttgagcgcggtgacgtggtttccgatggcccagagtctccacatgacatc
ctgcgcttgcgtggcgtgcatgcggtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcaaccatcgtgagcgcaggaagtgcagacttcctggaaggtgagcaggct
gaattctctcgcatcaagatctctaaccgtgatctggaagcgaacggaaaagtcggcgca
accttcatgcgtgacctgctgggtattaccaaagcgtcactggcaaccgaatcgttcatc
tctgcagcctcgttccaggagaccacacgtgtcctgaccgaagcagcagtagcaggcaag
cgcgatgaactgcgcggcctgaaagagaaagtcatcgtgggtcgtctgatcccagccggt
accggttatgcgtaccatcaggatcgtatgcgccgcaaagcggcaggtgaagttccggtt
gcaccgcaggtgactgcggatgaagcctcagccagcctggctgaactgttgaacgccggt
ctcggcggcaacaaagacgattaa
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