Pantoea alfalfae: K6R05_17890
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Entry
K6R05_17890 CDS
T09440
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
palf
Pantoea alfalfae
Pathway
palf03420
Nucleotide excision repair
palf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6R05_17890 (uvrD)
03430 Mismatch repair
K6R05_17890 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_17890 (uvrD)
Enzymes [BR:
palf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6R05_17890 (uvrD)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6R05_17890 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
K6R05_17890 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
AAA_30
UvrD_C_2
AAA_11
PhoH
DUF6658
Motif
Other DBs
NCBI-ProteinID:
QZX95571
LinkDB
All DBs
Position
complement(3834737..3836899)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSELLDGLNDNQRAAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQL
RLLKRLIKSMNLDDKQWPARQGMWYINGKKDEGLRPKHIESYGNPIEQTWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNVLVDEFQDTNNIQYAWIRMLAGDS
GRVIIVGDDDQSIYGWRGAQVENIQRFLQDFPGAETIRLEQNYRSTNNILKAANALIANN
NGRLGKELWTEGSDGEPISIYCAFNELDEARFVVNRIKVWMENGGALNDCAILYRSNAQS
RVLEEALLQSSMPYRIYGGMRFFERQEIKDALSYLRLMANRNDDAAFERVVNTPTRGVGD
RTLDVVRQTARERQMTLWQATRELLQSRALAGRAASALQRFCELVDSLATETAELPLHVQ
TDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAAL
EAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMLKLTLTYAETRRLYGKEVYHRPSRFIGELPETCIEEVRLRASVSRPVNHQRMG
APVTKNDSGFALGQRVHHAKFGEGTIINLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaactgctcgacggtttgaatgacaatcagcgcgcggccgttgcggct
ccgcgcagtaacctgctggtgctggcaggcgcgggcagtggtaaaacgcgggtgctggtg
catcgcattgcctggctgatgtcagtcgagaactgctcaccttattcgatcatggcggtg
acctttaccaacaaagcggcagcagagatgcgtcaccgtatcgaacatctgatcggcacc
agtcagggcgggatgtggatcgggactttccacggtctggcgcatcgcttactgcgtgcc
caccatcttgacgccggtctgccgcaggattttcagatcctcgacagtgaagaccagctg
cgtctgctcaagcgcctgatcaaatcgatgaaccttgatgacaagcagtggcctgcgcgc
cagggcatgtggtacatcaacggcaaaaaagatgaaggcctgcggccaaagcacattgaa
agttatggcaatccgattgagcagacctggctgcgcatttatcaggcttatcaggaagcc
tgtgaccgcgccggtttggtcgacttcgccgagctgctgctgcgcgctcatgagctctgg
ctcaacaagccgcatatcctgaatcactaccgcgaacgctttaccaacgtgctggtggat
gagtttcaggataccaacaacattcagtatgcctggattcggatgctggcgggtgacagc
ggccgtgtgatcatcgtgggggatgatgatcagtcgatctacggctggcgcggtgcgcag
gttgagaatattcagcgctttctgcaggattttcctggcgcggaaacgatccgtctggag
cagaactatcgctcaaccaataatatcctgaaagcggccaacgccctgatcgccaacaac
aatggccgtctgggtaaagagctctggaccgaaggcagcgatggcgaaccgatctctatc
tactgcgcttttaatgagctggatgaagcacgcttcgtggtcaaccgcatcaaggtctgg
atggagaacggcggtgcgctcaacgactgcgccattctctatcgcagcaacgcccagtcg
cgtgtgctggaagaggcgctgctgcagagcagcatgccgtaccgtatttatggcggcatg
cgcttctttgaacgccaggagatcaaagatgcgctctcctatctgcgtctgatggcgaac
cgcaatgacgacgccgcctttgagcgcgtggtgaataccccgacgcgcggcgtgggcgat
cgcacgctcgacgtggtgcgtcagacggcgcgtgaacgtcagatgacgctgtggcaggct
acgcgcgaactgctacaaagtcgcgcactggctggccgcgccgcgtctgcactgcaacgc
ttctgtgagctggtcgattcactggctaccgaaactgccgaattaccgctgcatgttcag
accgaccgggttatcaaagactctggcctgtggctgatgtatgagcaggaaaaaggcgaa
aagggtcaggcgcgtatcgaaaaccttgaggagctggtgacggcaacccgtcagttcagc
tatcaggatgaagatgaagatctgatgccgctgcaggccttcttatcccacgcggcgctg
gaagcgggcgaaggtcaggcagataaatggcaggatgcggttcagctgatgacgttgcac
tcagcaaaagggctggagttcagccaggtctttatcgtcggcatggaagagggcatgttc
ccaagccagatgtcgctggatgaaggcgggcggctggaagaggagcgtcgtctggcgtat
gtcggtgtgacccgcgcgatgctcaagctgacgctgacctacgctgaaacccgccgactc
tatggtaaggaagtgtatcaccggccttcccgttttatcggcgaactgcccgagacctgc
atcgaagaagtgcgtctgcgcgccagcgtcagccgtccggtcaaccatcagcgtatgggt
gccccggtgaccaaaaatgacagtggattcgcgctgggccagcgtgttcatcacgcaaaa
tttggcgaaggcaccatcattaatctggaaggcagcggtgagcacagtcgcctgcaggtg
gcgtttcagggtcagggaatcaagtggctggtggcggcttacgcgaagctggaaacgctt
tag
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