Parasphingopyxis algicola: HFP57_03190
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Entry
HFP57_03190 CDS
T06669
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
palg
Parasphingopyxis algicola
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
palg03016
]
HFP57_03190 (rnd)
Enzymes [BR:
palg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HFP57_03190 (rnd)
Transfer RNA biogenesis [BR:
palg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HFP57_03190 (rnd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QLC24130
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All DBs
Position
complement(644177..645358)
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AA seq
393 aa
AA seq
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MRIHPLIDDSDSLSDLCARLAKSDFVAVDTEFMRESTYWPDLCLIQIGDHEEAAAIDPKA
NGIDLTPLLDLLVDNEDVLKVFHAGGQDVEIVYNLTGKTPHPIFDTQIAAMALGLGEQIG
YSNLVDALLGQSLDKGARFTDWARRPLDKRQLDYAIGDVTHLAELFPRMLDRLRETGRGA
WINAEMERLADPANYANVPEESWKRVRIQSRKADVLGRLKAIAAWREREAQDKNLPRGRL
LRDETLADIASHPPKNQKALAKIRGLPSSWGGNDIGARLMQVVNHAEPLPESELPTRKSR
KPGLGKEGALVADLLKLLLKIRSREIGVASRLIAKADDLEQLAAGERDELGLLAGWRYEE
FGRDALNLVEGRVAFAVRDGKLKVTHAEDEGEG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatccatccgctgatcgacgacagcgattccctctcagacctgtgcgcgcgcctg
gcgaagtcggactttgtcgctgtcgacaccgagttcatgcgcgagagcacctattggccc
gacctgtgcctgatccagatcggcgatcacgaagaggccgccgctatcgatcccaaggca
aacggtatcgatctgacgccgctgctcgacctgctggtcgacaatgaggatgtgctgaag
gttttccacgccggcggccaggatgtcgagattgtctacaatctgaccggcaagacgccg
cacccgatcttcgacacgcagattgcggcgatggcgctcggtctcggcgagcagatcggc
tattcgaaccttgtcgacgcgctgctcggccagagcctcgacaagggcgcgcgctttacc
gactgggcccgtcgcccgctcgacaagcgtcagctcgattatgcgatcggcgatgtgacc
catctcgcagaactgtttccgagaatgctggaccggctgcgcgaaaccgggcgcggcgcc
tggatcaatgccgagatggagcggcttgccgatcccgcaaactacgccaatgtgcccgag
gagagctggaaacgcgtgcgcatccagagccgcaaggccgatgtgctggggcggttgaag
gcgatcgccgcctggcgcgagcgggaggcgcaggacaagaatttgccgcgcggccgactg
ctgcgcgacgagaccctggccgatatcgcgtcccatccgccgaaaaaccagaaggcgctc
gccaagatcaggggcctgccgtcaagctggggcggcaacgatatcggcgcccgactgatg
caggtcgtcaatcatgccgaaccgttgcccgagagcgaactgcccacccgcaagagccgg
aagccgggcctgggcaaggagggcgcgctggttgccgatctgctcaagctgctcctcaag
atccgttcgcgcgagatcggcgtcgcgtcgcgcctgatcgcgaaggcggacgatctcgag
caactggccgcgggcgagcgcgatgaattgggtttgctcgccggatggcgctacgaggag
tttggccgcgacgcgctcaacctggtcgagggccgcgttgcatttgccgtgcgcgacggg
aagttgaaggtgacgcatgcggaggatgagggtgagggttag
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