Parasphingopyxis algicola: HFP57_03815
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Entry
HFP57_03815 CDS
T06669
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HFP57_03815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_03815 (mfd)
Enzymes [BR:
palg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFP57_03815 (mfd)
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HFP57_03815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
SecA_DEAD
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QLC24242
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All DBs
Position
768668..772126
Genome browser
AA seq
1152 aa
AA seq
DB search
MTDIQTILDADQPLTLASAPTGFLPSLMADLARAAAFKGLPAVYIAPDDAAMRGLADAAA
YFAPEIETIAFPAWDCLPYDRASPSLRISAERLAALHALQRETAKPRLIATTINAVTQQT
LTPFRVRQLVAHLAPGERIDRDELTAKLQANGYIRVESVADAGEFAVRGGLLDLFPSGEK
EALRLDFFGDEIESIRRFDPADQRTTGRAESFTLLPASEALLDEENIKRFRGGYRELFGA
TATGDPLYQAISEGRRLAGMEHWLPLFEDKLATLFDHLDAQTVFVRDAGTPAAAEARFEA
IADYYRNRENVGSSDPGSYRPLAPETLYLSNELWAARIAETPVHLTSPFREPESETVVDL
GVESARDFAPERKANANIYEAVVDHIRDLRAQDRKVVLASYSIGARERLGGLLEEHGLDG
AGMADNWQSALGADVALAIIPLDHGYTAENVAVLTEQDMLGDRLRRRTRRKKDADAFFNE
LATLSPGDLVVHSEHGIGRYEGLTSIPVGNAPHDCVALEYAGGDKLYVPVENLDVLSRYG
AQTEGVTLDKLGGEGWQRRKARMKDRIREIAGDLIATAAARALRKADAAEPDSSYASFVD
RFPYAETEDQDRAIDQVIADLGKGTPMDRLVCGDVGFGKTEVALRAAYVAAMAGMQVALV
CPTTLLARQHFTNFQERFSGFPMKIGRLSRLVPANEAKATRQGVADGSVDIVIGTHALLA
KSVEFKRLGLVIVDEEQHFGVVHKERLKSLKADVHVLTLTATPIPRTLQMAMSGLRELSV
IQTPPIDRLAVRTYVMPWDPVVLREALLREHYRGGQSFFVVPRISDLPEIEEFLREEVPE
VRFVTAHGQMAPTIVEERMSAFYDKRYDALLSTTIVESGLDIPSANTLIVHRANQFGLSQ
LYQLRGRVGRSKERAYAYLTTPANRIVTEAAEKRLGVLSDLESLGAGFQLASHDLDQRGA
GNLLGDEQSGHIKEVGFELYQSMLEDAIVAAKAGDAGIEMSDSDFSPQITVDAPILIPDD
YVPDLDLRMGLYRRMNALENRQEVEAFAAELIDRFGEIPAPTANLLKIIETKLNAKQAQI
AKIDVGPRGALVGFFRDSFPNPAGLVDYVERLKGTAKLRPDHKLVITRNWGDPQGRLNGA
LQLSKGLAKAAR
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgactgacatccagacgatcctcgacgccgatcagccgctgacgctggcgagcgcgccc
accgggttcctgccctcgctgatggccgatctcgcgcgcgccgcggcgttcaagggcttg
cccgccgtctatatcgcgcccgacgatgccgcgatgcgtggcctcgccgatgcggccgct
tatttcgctcccgagatcgagacgatcgcctttccggcctgggactgcctgccctatgac
cgggcgagcccgagcctgaggatatcggcggaacgtctggcggcgctccacgcattgcag
cgcgaaaccgcgaagccgcggttgatcgcgacgacgatcaacgcggtcacgcagcagacg
ctgacgccgttccgcgtccgccagctcgtcgcgcatctcgcccccggcgagcggatcgac
cgcgacgagctaaccgccaagctccaggccaatggctatatccgcgtcgaaagcgttgcc
gatgccggggagtttgccgtacgcggcgggttgctggatcttttcccgtccggcgaaaag
gaagcgctgcggctcgatttcttcggcgacgagatcgagagcatccggcggttcgatccc
gccgaccaacggacgaccgggcgcgccgaaagcttcacgctgctgcccgcctcagaagcg
ctgctcgacgaggagaatataaaacgcttccgtggcggctatcgcgaacttttcggcgcc
actgcgaccggcgatccgctctaccaggcgatcagcgagggccgccgccttgcaggcatg
gagcattggctgccgctgttcgaagacaaactagcgaccttattcgatcacctcgatgcg
caaacggtcttcgtccgcgacgcgggaacgccggcggccgccgaggcgcggttcgaggcg
attgccgattattaccggaatcgggagaatgtgggctcgtccgaccccggcagctatcgg
ccgctcgcgcccgaaacgctgtatctctcgaacgaactatgggcggcgcggatcgccgag
actcccgtccacctcaccagccctttccgggagcccgaaagcgaaacggtggtcgatctc
ggagtggagagcgcccgcgatttcgcgcccgagcgcaaggccaatgccaatatctacgaa
gcggtcgtcgaccatatccgcgatttgcgcgcgcaggacagaaaggtggttctcgccagc
tatagcatcggcgcccgcgagcggctcggcggactgctcgaggagcatggcctggacggc
gccggcatggccgataactggcagagcgcgctcggcgcggacgtcgcgctggcgatcatc
ccgctcgatcacggctacacggccgaaaatgtcgccgtccttaccgagcaggacatgctc
ggcgaccggctccgccgccggacgcgccggaaaaaggatgccgacgcctttttcaacgaa
ctggcgacgctctcgcccggcgatctcgtcgtccatagcgagcatggcatcggccgctat
gaaggcctgacctcgatcccggtcggcaatgcgccgcatgattgcgtcgcgctcgaatat
gcgggcggcgacaagctctacgtcccggttgaaaatctcgacgtgctgtcgcgctacggc
gcgcagaccgagggcgtgacgctcgacaagctcggcggcgaaggctggcagcggcgcaag
gcgcggatgaaggaccggatccgcgagatcgccggggacctgatcgcgaccgccgcagca
cgcgcgctgcgcaaggccgatgccgccgaacccgattccagctatgcgagcttcgtcgat
cgctttccctatgccgaaaccgaggatcaggaccgggcgatcgaccaggtcatcgccgat
ctcggcaagggtacgccgatggaccggctggtctgcggcgatgtcgggttcggcaagacc
gaggtggcgctgcgcgcggcctatgtcgccgcgatggcgggcatgcaggtcgcgctcgtc
tgcccgaccaccctgctcgcgcgccagcattttaccaatttccaggagcgtttttccggc
tttccaatgaagatcgggcggctctcgcgcctcgtgcccgcgaacgaggccaaggcaacc
cgccaaggcgttgccgacggctcggtcgatatcgtgatcggcacccatgcactgctcgcc
aagtcggtcgaattcaaacggctcgggctcgtcatcgtcgacgaggagcagcatttcggc
gtcgtccacaaggaacggctgaaatcgctcaaggccgacgtccatgtcctgacgctgacc
gcgacgccgatcccccgcacgctccagatggcgatgtccggcctgcgcgaactctcggtc
atccagacgccgccgatcgaccggctcgcagtgcgcacctatgtcatgccctgggacccg
gtcgtgctgcgcgaggcgctgctgcgcgaacattatcgcggcgggcagagcttcttcgtc
gtaccgcgcatctccgacctgcccgagatcgaggagttcctgcgcgaggaagtgcccgaa
gtccgcttcgtcaccgcgcatggccagatggcgccgaccatcgtcgaagagcggatgagc
gccttttacgacaagcgctatgacgccctcctctcaacgacgatcgtcgaaagcgggctc
gatatcccctcggccaacacgctgatcgtccatcgcgcgaaccagttcggtctctcgcag
ctttaccagctgcgcggacgcgtcggccggtccaaggagcgcgcctatgcctatctgacg
accccggccaaccggatcgtcaccgaggcggcggaaaagcggctcggcgtgctctccgat
ctcgaatcgctgggtgcgggcttccagctcgcgagccacgatctcgaccagcgcggcgcg
ggaaacctgctcggcgacgaacagtcgggccatatcaaggaagtcgggttcgaactctac
cagtcgatgctcgaggatgcgatcgtcgcggccaaggccggcgatgccgggatcgagatg
tcggacagcgacttctcgccgcagatcacggtcgatgcgccgatcctcatccccgacgat
tacgtccccgatctcgatctgcgcatgggtctctatcgccgcatgaacgcgctcgaaaac
cggcaggaagtcgaggcgttcgcggccgagctgatcgaccggttcggcgagataccggcg
ccgacggcgaacctgctcaagatcatcgaaaccaagttgaacgcgaagcaggcccagatc
gcgaagatcgatgtcggcccgcgcggcgcactggtcggtttcttccgggacagctttccc
aatccggccgggctcgtcgactatgtcgagcggctcaagggcacggccaagctgcgcccg
gaccataaactggtcatcacgcgcaactggggcgatccgcagggccggctaaatggcgcg
ctgcagctttccaaggggctcgccaaggcggcacggtaa
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